View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0999-INSERTION-4 (Length: 121)

Name: NF0999-INSERTION-4
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0999-INSERTION-4
NF0999-INSERTION-4
[»] chr4 (1 HSPs)
chr4 (8-121)||(75151-75264)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 6e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 75264 - 75151
Alignment:
Q  8 gcttattgggttaggctgcagttaaattaaaaaagtaaaattaattacttctgaactgagggaaaacctaaaccatatactttttnnnnnnnntcaggta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  75264 gcttattgggttaggctgcagttaaattaaaaaagtaaaattaattacttctgaactgagggaaaacctaaaccatatactttttaaaaaaaatcaggta 75165  T
Q  108 ctggctgtaaaaaa 121  Q
    ||||||||||||||    
T  75164 ctggctgtaaaaaa 75151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University