View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-5 (Length: 735)
Name: NF0999-INSERTION-5
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 8 - 735
Target Start/End: Complemental strand, 30276468 - 30275743
Alignment:
| Q |
8 |
gatttctgagaaaaagtccatggttataaaacaattggtacagatagttgagaacaaaagaatagaaggaccagaactaaaaagtgcactggctacactt |
107 |
Q |
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| T |
30276468 |
gatttctgagaaaaagtccatggttataaaacaattggtacagatagttgagaacaaaagaatagaaggaccagaactaaaaagtgcactggctacactt |
30276369 |
T |
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| Q |
108 |
tgcaggcttggtgatactcaacttgctattcatctattgcttaaatattaccatttgtgtattgtaactggaacaaataatttgcagtgggaagattcat |
207 |
Q |
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| T |
30276368 |
tgcaggcttggtgatactcaacttgctattcatctattgcttaaatattaccatctgtgtattgtaactggaacaaataattttcagtgggaagattcat |
30276269 |
T |
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| Q |
208 |
caatgaatgacatatatatcagaaagcttgctaggtttgtgttttctaagatctcacaagcgaccaagagctttgtgatgttatgtggagaaacttctgc |
307 |
Q |
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| T |
30276268 |
caatgaatgagatatatatcagaaagcttgctaggtttgtgttttctaagatctcacaagcggccaagagctttgtgatgttatgtggagaaacttctgc |
30276169 |
T |
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| Q |
308 |
ttatgcctcagaacttatgttgtggccatatgaagaaacaatgtcatttattacttgttttgagaaatttgttaaatccacatcagaagtaagtgttggt |
407 |
Q |
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| T |
30276168 |
ttatgcctcagaacttatgttgtggtcatatgaagaaacaatgtcatttattacttgttttgagaaatttgttaaatccacatcagaagtatgtgttggt |
30276069 |
T |
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| Q |
408 |
ttgtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactct |
507 |
Q |
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| T |
30276068 |
ttgtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactct |
30275969 |
T |
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| Q |
508 |
ttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaatacct |
607 |
Q |
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| T |
30275968 |
ttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaatacct |
30275869 |
T |
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| Q |
608 |
tgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctagtgggccggaaggttctgacactattgca-gt |
706 |
Q |
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| T |
30275868 |
tgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctagt-ggccggaaggttctgacactattacaggt |
30275770 |
T |
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| Q |
707 |
gtgttcataattaccatacattattaaac |
735 |
Q |
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| T |
30275769 |
gtgttc--aattaccatacattattaaac |
30275743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 336 - 735
Target Start/End: Complemental strand, 7779440 - 7779054
Alignment:
| Q |
336 |
tatgaagaaacaatgtcatttattacttgttttgagaaatttgttaaatccacatcagaagtaagtgttggtttgtcctctgccataaaggctgcgaagt |
435 |
Q |
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| T |
7779440 |
tatgaagaaacaatgtcatttattacttgttttgacaa-tttgttaaatgcacatcagaagtaagtgttggtttgtcctatgccataaatt-------gt |
7779349 |
T |
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| Q |
436 |
ttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatac |
535 |
Q |
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| T |
7779348 |
ttgcagtcatggattgttct--gttagaagatcagaaattaatgctgctaccatacttggtaaagcatctctttccttgcattgaagag-ttttgaatac |
7779252 |
T |
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| Q |
536 |
acacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctggg |
635 |
Q |
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| T |
7779251 |
acacataaaccactttaagaaagtgattcctatattctcagtaagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgga |
7779152 |
T |
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| Q |
636 |
tcttcaaccgaacaacctgattattgtctgctaacttctagtgggccggaaggttctgacactattgca-gtgtgttcataattaccatacattattaaa |
734 |
Q |
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| T |
7779151 |
tcttcaaaagaacaacctgattattgtctgctaacttctagt-ggccagaacgttctgacactattacaggtgtgttc--aattaccatatattattaaa |
7779055 |
T |
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