View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0999-INSERTION-6 (Length: 722)
Name: NF0999-INSERTION-6
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 673
Target Start/End: Original strand, 866694 - 867356
Alignment:
| Q |
8 |
gtaaaggtataaccctcgatacaataaagcttgaatcaagccaaaactccaaagttcctttctgttggaaagcatatggtgagttgaaagctgaaattgt |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
866694 |
gtaaaggtataacccttgatacaataaagcttgaatcaagccaaaactccaatgttcctttttgttggaaagcatatggtgaattgaaaactgaaattgt |
866793 |
T |
|
| Q |
108 |
tcctcctgttgattgtcttcaaagagggaatccatcaagtggtggaatcacttctaacaaagaaagttcttgctgaatttaataatcatcgacacttcaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
866794 |
tcctcctgttgattgtcttcaaagagggaatccatcaagtggtggaatcacttctaacaaagaaagttcttgctgaatttaataatcatcgacacttcag |
866893 |
T |
|
| Q |
208 |
attaaaaatttgtttaggatctgacacttgtgtcagtgtcagtgtttggcatcggcaaatgttttata--ttcaattatttattttcttaaatagtatca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
866894 |
attaaaaatttgtttaggatctgacacttgtgtcagtgt------ttggcatcggcaaatgttttatatattcaattctttattttcttaaatagtatca |
866987 |
T |
|
| Q |
306 |
gtgtcaatgtggtgtttggtgtctatatgcttcatagatattacattcaaaggattatcgtataatatataggttatatatagaaaattgttatcttgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
866988 |
gtgtcaatgtggtgtttggtgtctatatgcttcatagatattatattcaaaggattatcgtataatatataggttatatatagaaaattgttatcttgat |
867087 |
T |
|
| Q |
406 |
ttccaattcattgtgttggggaagttaagattatagtatacatataggaagttgttattttgatttctaaattagtttatgtataaagtaatgttgggtg |
505 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
867088 |
ttccaattcattgtgttggggaaattaagattatagtatacatataagaagttgttattttgatttctaaattagtttatgtttaatgtaatgttgggtg |
867187 |
T |
|
| Q |
506 |
acatattaagattatatttgactttatgatttgcaaatagcatttttatttaaaactatgttgtttcacaaacatttatcatatgcgttgtacttac-gg |
604 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
867188 |
acagattaagattatattagactttatgatttgcaaataacatttttatttaaaattatgtcgtttcacaaacatttatcatatgcgttgtacttacagg |
867287 |
T |
|
| Q |
605 |
ataaacaattttactactatgatcaaaagcaaacatgcatcaaactgtaattaatagttttgctatcaa |
673 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
867288 |
atacacaattttaccactatgatcaaaagcaaacatgcatcaaactgtaattaatagttttggtatcaa |
867356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 722
Target Start/End: Original strand, 867376 - 867405
Alignment:
| Q |
693 |
cgcaaattttgttagaagaaaacaagctag |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
867376 |
cgcaaattttgttagaagaaaacaagctag |
867405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University