View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0999-INSERTION-7 (Length: 736)

Name: NF0999-INSERTION-7
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0999-INSERTION-7
NF0999-INSERTION-7
[»] chr3 (1 HSPs)
chr3 (8-736)||(49443909-49444641)


Alignment Details
Target: chr3 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 8 - 736
Target Start/End: Original strand, 49443909 - 49444641
Alignment:
Q  8 attacttacttccatacttccctacactattaatacgagaaaaataaacactacttgaacatagcaccactggaacatagccttccattaatcccagatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49443909 attacttacttccatacttccctacactattaatacgagaaaaataaacactacttgaacatagcaccactggaacatagccttccattaagcccagatg 49444008  T
Q  108 aaatcaaattccactatgaaatacactgcatctcacaatcatttttctccctgttctctgaaatcattaaaaaagttaagtaaaaaaccaagtagaaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49444009 aaatcaaattccactatgaaatacactgcatctcacaatcatttttctccctgttctctgaaatcattaaaaaagttaagtaaaaaaccaagtagaaatt 49444108  T
Q  208 tcatgtctttctttttaatgccaagaaccataaaaatttcagttgtggaactcatgataaacaccgccgacttcctgtttatcagtttatcaaggcagga 307  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49444109 tcatgtctttctttttaatgccaagaaccataaaaattttagttgtggaactcatgataaacaccaccgacttcctgtttatcagtttatcaaggcagga 49444208  T
Q  308 agaaaattaaattagatcacaagttatggcctggctgctgcgcaaacaggaaaaataataccttagtattgacttgtttcatcaaaccattatatcacaa 407  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49444209 agaaaattaaattaaatcacaagttatggcctggctgctgcgcaaacaggaaaaataataccttagtattgacttgtttcatcaaaccattatatcacaa 49444308  T
Q  408 accagaatatactatacatctattttgacagcaacgattatgaacacaaccaaccaatagtaaagtcaacagtaaagggaataaacattgtcctaacagt 507  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49444309 accagaatatactatacatctattttgacagcatcgattatgaacacaaccaaccaatagtaaagtcaacagtaaagggaataaacattgtcctaacagt 49444408  T
Q  508 accacgagaacaaatcaatccctccaccaggatgccaataccatggccttatctcttgggatattagaccctttaaacagacacatc----ggcttggcg 603  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    |||||||||    
T  49444409 accacgagaacaaatcaatccctccaccaggatgctaataccatggccttacctcttgggatattagaccctttaaacagacacatcatgtggcttggcg 49444508  T
Q  604 tggcgtggcgtggcgtggcctgggcttaccttatgcctgggtattaaatttctctatcaagtggatcaaagattacaaacttccattgcaaaaagagtaa 703  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49444509 tggcgtggcgtggcatggcatgggcttaccttatgcctgggtattaaatttctctatcaagtggatcaaagattacaaacttccattgcaaaaagagtaa 49444608  T
Q  704 aagatcatgcatctattgcattttgtggagcag 736  Q
    |||||||||||||||||||||||||||||||||    
T  49444609 aagatcatgcatctattgcattttgtggagcag 49444641  T

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