View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0999-INSERTION-8 (Length: 459)
Name: NF0999-INSERTION-8
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-8 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 36839104 - 36839555
Alignment:
| Q |
8 |
atcatcaatcaaaacatgtactttcttatgtaacattttgaaatgtgtcaaatttatatagtgctttttatttaataaactaaaaccactgttttctaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
36839104 |
atcatcaatcaaaacatgtactttcttatgtaacaatttgaaatgtgtcaaatttatatagtgctttttatttaataaactaaaaccattgtttgctaaa |
36839203 |
T |
|
| Q |
108 |
ttttacgatcgtagctttttcgatatcattattatgttatcatgtcattttttgctctattattgatcttgattggagactgttttctttcttgagagca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36839204 |
ttttacgatcgtagctttttcgatatcattattatgttatcatgtcattttttggtctattattgatcttgattggagactgttttctttcttgagagca |
36839303 |
T |
|
| Q |
208 |
tatttgacatttctgtgtgaaaatcctctacaatcttcagctgtatgtgcatatatccaaagtgtactaactttataatatggaatcactgtttgatgga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36839304 |
tatttgacatttctgtgtgaaaatcctctacaatcttcagctgtatgtgcatatatccaaagtgtactaactttataatatggaatcactgtttgatgga |
36839403 |
T |
|
| Q |
308 |
atctaagctggcatgtgaagtcttttccaggattatctcaaattataatcacaatcaatttgnnnnnnngtgaatatttaatggctaggagatcatagag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36839404 |
atctaagctggcatgtgaagtcttttccaggattatctcaaattataatcacaatcaatttgtttttttgtgaatatttaatggctaggagatcatagag |
36839503 |
T |
|
| Q |
408 |
tattcttgctgtctgtataatgggcccattacgaatttgtcaaaaaccgatt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36839504 |
tattcttgctgtctgtataatgggcccattacgaatttgtcaaaaaccgatt |
36839555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 107 - 434
Target Start/End: Complemental strand, 12078716 - 12078391
Alignment:
| Q |
107 |
attttacgatcgtagctttttcgatatcattattatgttatcatgtcattttttgctctattattgatcttgattggagactgttttctttcttgagagc |
206 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||| | |||||||| ||||||| ||||| |||||||| | ||| |||||||||||| | |
|
|
| T |
12078716 |
attttatgatcgtagctttttggatatcattattatgttatcatataattttttggtctattactgatcctgattggatattgtattctttcttgag--c |
12078619 |
T |
|
| Q |
207 |
atatttgacatttctgtgtgaaaatcctctacaatcttcagctgtatgtgcatatatccaaagtgtactaactttataatatggaatcactgtttgatgg |
306 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12078618 |
atatttgaaatttctttgtgaaa-tcctctatgatcttcagctgtatgtgcatagatccaaagtgtactaactttataatatggaatcactgtttgatgg |
12078520 |
T |
|
| Q |
307 |
aatctaagctggcatgtgaagtcttttccaggattatctcaaattataatcacaatcaatttg-nnnnnnngtgaatatttaatggctaggagatcatag |
405 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12078519 |
aatctaagctgtcatgtgaagtcttttccagggttatctcaaattataataacaatcaatttgatttttttgtgaatatttaatggctaggagatcatag |
12078420 |
T |
|
| Q |
406 |
agtattcttgctgtctgtataatgggccc |
434 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
12078419 |
agtattcttattgtctgtataatgggccc |
12078391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9602 times since January 2019
Visitors: 1247