View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-9 (Length: 723)
Name: NF0999-INSERTION-9
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-9 |
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Alignment Details
Target: chr3 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Original strand, 16790597 - 16791308
Alignment:
| Q |
7 |
acaaaatagttaccttacttacattcatgacttagatacatctatatgcttaatacacaatcttaatcgcctatgctaagttgtttatgccatatatttc |
106 |
Q |
| |
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| T |
16790597 |
acaaaatagttaccttacttacattcatgacttagatacatctatatgcttaatacacaatcttaatcgtctatgctaagttgtttatgccatatatttc |
16790696 |
T |
|
| Q |
107 |
attcacttttggttaatgaatgtattaaattgtgtgtgttttggtatctttcttgttttattttacatatctttggaggttacaaaataatggcctaaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16790697 |
attcacttttggttaatgaatgtattaaattgtgtgtgttttggtatctttcttgttttattttacatatctttggaggttacaaaataatggcctaaga |
16790796 |
T |
|
| Q |
207 |
ttggttcagcaagagcaaataatttacgttttatctttatwaggatttggttacgatgttatttctaataacgttattgcatttggttcaggtaccggtg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16790797 |
ttggttcagcaagagcaaataatttacgttttatctttattaggatttggttacgatgttatttctaataacgttattgcatttggttcaggtaccggtg |
16790896 |
T |
|
| Q |
307 |
cttgggagagtgctctgacaaacacattgtcacctggagatcgtattgtatctttcgtgattggccaattcagtttgctttgggttgatcagcagcaacg |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16790897 |
cttgggagagtgctctgacaaacacattgtcacctggagatcgtattgtatctttcgtgattggccaattcagtttgctttgggttgatcagcagcaacg |
16790996 |
T |
|
| Q |
407 |
ccttaaatttaatgtcgatgttgtggaaagtgaatggggccgtggtgctgatctcgacattctagaatcaaaacttgcttctgattctgcacacactata |
506 |
Q |
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| T |
16790997 |
ccttaaatttaatgtcgatgttgtggaaagtgaatggggccgtggtgctgatctcgacattctagaatcaaaacttgcttctgattctgcacacactata |
16791096 |
T |
|
| Q |
507 |
aaggctatttgcattgttcataatgagactgcaactggtatcaccaataacttggccaaagttcgacaacttctcggtgagcatgaaaacttcttactta |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16791097 |
aaggctatttgcattgttcataatgagactgcaactggtgtcaccaataacttggccaaagttcgacaacttctcggtgagcatgaaaacttcttactta |
16791196 |
T |
|
| Q |
607 |
catagccacaaaatctgattctctatccaagttgtcattgtacacacatgctcctagtttcactgttcaatggtcaatcttatgaaaatttacgttcgca |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16791197 |
catagccacaaaatctgattctctatccaagttgtcattgtacacacatgctcctagtttcactgttcaatggtcaatcttatgaaaatttaccttcgca |
16791296 |
T |
|
| Q |
707 |
aatattaatttt |
718 |
Q |
| |
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|||||||||||| |
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| T |
16791297 |
aatattaatttt |
16791308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 294 - 535
Target Start/End: Complemental strand, 39189320 - 39189079
Alignment:
| Q |
294 |
tcaggtaccggtgcttgggagagtgctctgacaaacacattgtcacctggagatcgtattgtatctttcgtgattggccaattcagtttgctttgggttg |
393 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||| |||||||| ||||| ||||||| |||||||| | |||||||||||||| ||||||||| ||| |
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| T |
39189320 |
tcaggtaccggtgcatgggagagtgcattgacaaatacattgtctcctggggatcgtaccgtatcttttctaattggccaattcagcttgctttggattg |
39189221 |
T |
|
| Q |
394 |
atcagcagcaacgccttaaatttaatgtcgatgttgtggaaagtgaatggggccgtggtgctgatctcgacattctagaatcaaaacttgcttctgattc |
493 |
Q |
| |
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| || || |||| || || ||||| || |||||||| |||||||||||||| | ||||| ||||| || |||||||||||||||||||| ||| |
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| T |
39189220 |
aacaacaaaaacggctcaactttaaagttgatgttgtagaaagtgaatggggacagggtgccgatcttgatgcactagaatcaaaacttgcttcggataa |
39189121 |
T |
|
| Q |
494 |
tgcacacactataaaggctatttgcattgttcataatgagac |
535 |
Q |
| |
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|||| || |||||||| ||||| |||||||| |||||||| |
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| T |
39189120 |
aacacataccataaaggcaatttgtattgttcacaatgagac |
39189079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 288 - 535
Target Start/End: Complemental strand, 28460282 - 28460037
Alignment:
| Q |
288 |
tttggttcaggtaccggtgcttgggagagtgctctgacaaacacattgtcacctggagatcgtattgtatctttcgtgattggccaattcagtttgcttt |
387 |
Q |
| |
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|||| |||||||| |||||| ||||||||||| ||||||| |||||||| | ||| ||||||| ||||| ||| | |||||||||||||||||||||| |
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| T |
28460282 |
tttgtttcaggtatcggtgcatgggagagtgcattgacaaatacattgtctcttggggatcgtagtgtattttt--taattggccaattcagtttgcttt |
28460185 |
T |
|
| Q |
388 |
gggttgatcagcagcaacgccttaaatttaatgtcgatgttgtggaaagtgaatggggccgtggtgctgatctcgacattctagaatcaaaacttgcttc |
487 |
Q |
| |
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|| |||| || || || |||| || ||||| | |||||||| |||||||||||||| | |||| ||||| || ||||||||||||||||||||| |
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| T |
28460184 |
ggattgaacaacaaaaatgcctcaactttaagattgatgttgtagaaagtgaatggggtcaaggtgtcgatcttgatgctctagaatcaaaacttgcttc |
28460085 |
T |
|
| Q |
488 |
tgattctgcacacactataaaggctatttgcattgttcataatgagac |
535 |
Q |
| |
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||| |||| || ||||| || ||||| ||||||||||||||||| |
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| T |
28460084 |
agataaaacacataccataaaagcaatttgtattgttcataatgagac |
28460037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 295 - 445
Target Start/End: Original strand, 41260830 - 41260980
Alignment:
| Q |
295 |
caggtaccggtgcttgggagagtgctctgacaaacacattgtcacctggagatcgtattgtatctttcgtgattggccaattcagtttgctttgggttga |
394 |
Q |
| |
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||||||| ||||| | ||||||||| |||||||| ||| |||| ||||| |||||| | ||||||| | |||||||||||||||||||||||| |||| |
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| T |
41260830 |
caggtactggtgcataggagagtgcactgacaaatacaatgtctcctgggtatcgtactatatcttttctaattggccaattcagtttgctttggattga |
41260929 |
T |
|
| Q |
395 |
tcagcagcaacgccttaaatttaatgtcgatgttgtggaaagtgaatgggg |
445 |
Q |
| |
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|| || ||||||| || ||||| || |||||||| |||||||||||||| |
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| T |
41260930 |
acaacaaaaacgcctcaactttaaggttgatgttgtagaaagtgaatgggg |
41260980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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