View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0999_low_3 (Length: 379)

Name: NF0999_low_3
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0999_low_3
NF0999_low_3
[»] chr2 (11 HSPs)
chr2 (87-258)||(28922304-28922475)
chr2 (80-197)||(6667466-6667584)
chr2 (13-80)||(12742925-12742992)
chr2 (13-80)||(23347751-23347818)
chr2 (93-198)||(14456256-14456362)
chr2 (80-208)||(21922337-21922464)
chr2 (80-150)||(28125539-28125610)
chr2 (13-55)||(10328135-10328177)
chr2 (98-149)||(14456372-14456423)
chr2 (80-146)||(38996520-38996587)
chr2 (24-80)||(18354077-18354133)
[»] chr3 (22 HSPs)
chr3 (80-203)||(15291464-15291588)
chr3 (13-81)||(17689618-17689686)
chr3 (13-81)||(19769841-19769909)
chr3 (13-80)||(31687820-31687887)
chr3 (13-81)||(12531173-12531241)
chr3 (13-81)||(19881193-19881261)
chr3 (13-81)||(24124600-24124668)
chr3 (13-81)||(37985034-37985102)
chr3 (13-80)||(53972370-53972437)
chr3 (114-197)||(48909783-48909867)
chr3 (80-198)||(49235425-49235544)
chr3 (20-81)||(50836122-50836183)
chr3 (20-81)||(50839670-50839731)
chr3 (17-80)||(53024667-53024730)
chr3 (20-82)||(33648118-33648180)
chr3 (20-81)||(24758760-24758821)
chr3 (20-81)||(24767757-24767818)
chr3 (21-74)||(24813321-24813374)
chr3 (24-80)||(32013721-32013777)
chr3 (20-74)||(24827193-24827247)
chr3 (80-147)||(15996379-15996446)
chr3 (80-112)||(39484844-39484876)
[»] chr5 (12 HSPs)
chr5 (80-205)||(22780000-22780126)
chr5 (21-84)||(32872149-32872212)
chr5 (13-81)||(7472278-7472346)
chr5 (13-80)||(9045086-9045153)
chr5 (13-80)||(30441367-30441434)
chr5 (17-80)||(22002823-22002886)
chr5 (13-80)||(30442667-30442734)
chr5 (20-82)||(36971137-36971199)
chr5 (43-82)||(26836399-26836438)
chr5 (28-73)||(22004578-22004623)
chr5 (30-74)||(4734874-4734918)
chr5 (168-220)||(6752607-6752659)
[»] chr7 (9 HSPs)
chr7 (80-205)||(48850729-48850855)
chr7 (13-81)||(1264885-1264953)
chr7 (13-81)||(48846985-48847053)
chr7 (13-80)||(26906538-26906605)
chr7 (13-82)||(43070151-43070220)
chr7 (13-81)||(14237176-14237244)
chr7 (80-146)||(20077342-20077409)
chr7 (80-160)||(39742280-39742361)
chr7 (87-150)||(30061502-30061566)
[»] scaffold0096 (1 HSPs)
scaffold0096 (13-81)||(32663-32731)
[»] chr8 (9 HSPs)
chr8 (13-81)||(27535270-27535338)
chr8 (13-79)||(14672345-14672411)
chr8 (13-73)||(8164081-8164141)
chr8 (28-80)||(5662531-5662583)
chr8 (20-80)||(11730996-11731056)
chr8 (20-80)||(23741308-23741368)
chr8 (20-80)||(23741405-23741465)
chr8 (28-80)||(31098579-31098631)
chr8 (80-146)||(26083906-26083973)
[»] scaffold0596 (1 HSPs)
scaffold0596 (13-81)||(1623-1691)
[»] chr6 (9 HSPs)
chr6 (13-80)||(31891253-31891320)
chr6 (28-82)||(33043138-33043192)
chr6 (299-373)||(26840185-26840262)
chr6 (80-206)||(26840418-26840545)
chr6 (299-373)||(26840618-26840695)
chr6 (32-82)||(2918371-2918421)
chr6 (20-80)||(21999134-21999194)
chr6 (80-150)||(7867944-7868015)
chr6 (80-206)||(26839992-26840119)
[»] chr4 (8 HSPs)
chr4 (13-95)||(48289909-48289991)
chr4 (13-81)||(29861237-29861305)
chr4 (94-203)||(7810064-7810175)
chr4 (174-220)||(2827211-2827257)
chr4 (80-160)||(6898738-6898819)
chr4 (24-73)||(32584898-32584947)
chr4 (30-82)||(21207384-21207436)
chr4 (88-146)||(10427648-10427706)
[»] scaffold0035 (1 HSPs)
scaffold0035 (13-81)||(37234-37302)
[»] scaffold0045 (1 HSPs)
scaffold0045 (13-83)||(10083-10153)
[»] chr1 (1 HSPs)
chr1 (13-78)||(25226932-25226997)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 87 - 258
Target Start/End: Complemental strand, 28922475 - 28922304
Alignment:
Q  87 ctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaatcctcctaagtggtaatcctaatcag 186  Q
    ||||||| ||| ||||||||||||   |||||||||||  |||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||    
T  28922475 ctaaagcatgtctggtcaagctattgtttaccctaatcttaacctaatttttccatccattgtgttagcattaatcattctaagtggtaatcctaatcag 28922376  T
Q  187 cattccactttgtaattcaaattttcctcccacaattttgtatgtttccaaagccaataccataattgtttc 258  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  28922375 cattccactttgtaattcaaattttcctcccacaagtttatatgtttccaaagccaataccataattgtttc 28922304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 6667466 - 6667584
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcctaagtggtaatc 178  Q
    |||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||| ||||||||||| || | |||| || |||||    
T  6667466 tttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaatttttccctccattgcattagcattaactctttctaaatgctaatc 6667565  T
Q  179 ctaatcagcattccacttt 197  Q
    |||||||||||||||||||    
T  6667566 ctaatcagcattccacttt 6667584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 12742925 - 12742992
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  12742925 aatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaatagtcctagt 12742992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 23347818 - 23347751
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23347818 aatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaatagtcctagt 23347751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 14456362 - 14456256
Alignment:
Q  93 cttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcatt-aatcctcctaagtggtaatcctaatcagcattc 191  Q
    ||||||||||||||||||   |||||||||| |||  ||||||||||||||||||||  ||||||| |||||| |||||||||| ||||||||| |||||    
T  14456362 cttgtttggtcaagctatcatttaccctaattcaactctaatttttccctccattgtgatagcattaaatccttctaagtggtattcctaatcaacattc 14456263  T
Q  192 cactttg 198  Q
    |||||||    
T  14456262 cactttg 14456256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 21922337 - 21922464
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccattgtattagcattaatcctcctaagtggtaatc 178  Q
    |||||||||||||||||| || |||||||||| ||||||||||||  |||||||| |||||||||| |  | ||||||||||  || |||||||  | ||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctccttaatcttagcattaa--cttctaagtgcaattc 21922434  T
Q  179 ctaatcagcattccactttgtaattcaaat 208  Q
    |||||||||||||||||||| |||||||||    
T  21922435 ctaatcagcattccactttggaattcaaat 21922464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 28125539 - 28125610
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccattgta 150  Q
    |||||| ||||||||||| |||||||||||| || |||||||||  || |||||| ||||||||||||||||    
T  28125539 tttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgta 28125610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 10328177 - 10328135
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccggg 55  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  10328177 aatatcagaacttttttaacttctccatttttaatgtcccggg 10328135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 14456423 - 14456372
Alignment:
Q  98 ttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgt 149  Q
    |||||||||||||   |||||||||| ||| |||||||||||||||||||||    
T  14456423 ttggtcaagctatcatttaccctaattcaaccctaatttttccctccattgt 14456372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 38996587 - 38996520
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccat 146  Q
    |||||| ||||||||||| || ||||||||||| ||||||||||   |||||||| ||||||||||||    
T  38996587 tttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccat 38996520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 18354133 - 18354077
Alignment:
Q  24 ttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||||||| ||||||||||||| || | ||| ||||||||| |||| ||||    
T  18354133 ttttttagcttctccatttttaatgtcctggacattaacacgggtaatagtcatagt 18354077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 15291464 - 15291588
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcctaagtggtaatc 178  Q
    |||||| ||||||||||||||||||||||||   |||||||||||  |||||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  15291464 tttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccattgtattagcattaactccttctaagtgctaatc 15291563  T
Q  179 ctaatcagcattccactttgtaatt 203  Q
    ||||||| |||||||||||| ||||    
T  15291564 ctaatcaacattccactttgaaatt 15291588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 17689618 - 17689686
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17689618 aatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 17689686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 19769841 - 19769909
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  19769841 aatatcaaaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaaaagttctagtt 19769909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 31687820 - 31687887
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  31687820 aatatcggaactttttttgcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 31687887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 12531241 - 12531173
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  12531241 aatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcacgggtaaacatcctagtt 12531173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 19881261 - 19881193
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  19881261 aatatcggaacttttttaacttctccatttttaatgtcccggacgttagcacgggtaatagtcctagtt 19881193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 24124668 - 24124600
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| |||| ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  24124668 aatatcggaacatttttagcttcttcatttttaatgtcccgggcgttagcaagggtaaaagtcctagtt 24124600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 37985034 - 37985102
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  37985034 aatatcggaacttttttaacttctccgtttttaatgtcccgggcgttagcacgggtaatagtcctagtt 37985102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 53972437 - 53972370
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||    
T  53972437 aatatcggaacttttttagcttctccatttttaatgttccgggcgttagcacggataatagtcctagt 53972370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 48909867 - 48909783
Alignment:
Q  114 ttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcctaagtggtaatcctaatcagcattccacttt 197  Q
    |||||||||||  |||||||||||||||| |||||||||||  |||| |||| |||| || ||||||||||||||||||||||||    
T  48909867 ttaccctaatcttaacctaatttttcccttcattgtattagtgttaactccttctaaatgctaatcctaatcagcattccacttt 48909783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 49235544 - 49235425
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcatt-aatcctcctaagtggtaatc 178  Q
    |||||| |||||| |||||||||||||||||   |||||||||| |||   |||||||| ||||||||||  || |||| |||| |  ||||||||| ||    
T  49235544 tttcttactaaagtttgtttggtcaagctatcatttaccctaattcaacattaattttttcctccattgtgataacattaaatctttttaagtggtattc 49235445  T
Q  179 ctaatcagcattccactttg 198  Q
    ||||||||||||||||||||    
T  49235444 ctaatcagcattccactttg 49235425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 50836122 - 50836183
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    ||||||||| | |||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  50836122 gaactttttcaacttctccatttttaatgtcccgggcggtagcacgggtaaaaggcctagtt 50836183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 50839731 - 50839670
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    ||||||||| | |||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  50839731 gaactttttcaacttctccatttttaatgtcccgggcggtagcacgggtaaaaggcctagtt 50839670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 53024730 - 53024667
Alignment:
Q  17 tcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    ||||||||||| |||||| || |||||||||||||||| || |||||||||||||||| |||||    
T  53024730 tcagaacttttatagcttttccatttttaatgtcccggacggtagcacgggtaaaagtactagt 53024667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 33648180 - 33648118
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagttt 82  Q
    ||||||||||| ||| || |||||||||||||| |||| |||||||||||||||| |||||||    
T  33648180 gaacttttttaacttttccatttttaatgtcccaggcggtagcacgggtaaaagtactagttt 33648118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 24758821 - 24758760
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||||| || ||| || ||||||||||||||||||| |||||||||||||||| ||||||    
T  24758821 gaacttttataacttttccatttttaatgtcccgggcggtagcacgggtaaaagtactagtt 24758760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 24767818 - 24767757
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||||| || ||| || ||||||||||||||||||| |||||||||||||||| ||||||    
T  24767818 gaacttttataacttttccatttttaatgtcccgggcggtagcacgggtaaaagtactagtt 24767757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 24813321 - 24813374
Alignment:
Q  21 aacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagt 74  Q
    ||||||| |||||| || ||||||||||||||||||| ||||||||||||||||    
T  24813321 aacttttatagcttttccatttttaatgtcccgggcggtagcacgggtaaaagt 24813374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 32013777 - 32013721
Alignment:
Q  24 ttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||| ||| |||||    
T  32013777 ttttttagcttccccatttttaatgtcccgggcggtagcacgggtaatagtactagt 32013721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 24827193 - 24827247
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagt 74  Q
    |||||||| || ||| || ||||||||||||||||||| ||||||||||||||||    
T  24827193 gaacttttataacttttccatttttaatgtcccgggcggtagcacgggtaaaagt 24827247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 15996446 - 15996379
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccatt 147  Q
    |||||| ||||||||||| || |||||||||   |||||||||| | |||||||||||||||| ||||    
T  15996446 tttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaatttttccctgcatt 15996379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 39484876 - 39484844
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatat 112  Q
    |||||| ||||||||||||||||||||||||||    
T  39484876 tttcttactaaagcttgtttggtcaagctatat 39484844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 22780126 - 22780000
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcctaagtggtaatc 178  Q
    |||||||||||||||||| || |||||||||   |||||||||||  ||||||||||||||||||||||| |||||||||| |||| ||||||| |||||    
T  22780126 tttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaatttttccctccattgtgttagcattaactccttctaagtgctaatc 22780027  T
Q  179 ctaatcagcattccactttgtaattca 205  Q
     ||||||||||| ||||||||||||||    
T  22780026 ataatcagcatttcactttgtaattca 22780000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 32872149 - 32872212
Alignment:
Q  21 aacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtttct 84  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  32872149 aacttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtcctagtttct 32872212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 7472346 - 7472278
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  7472346 aatatcggaacttttttagcttctctatttttaatgtcccggacgttagcacgtgtaatagtcctagtt 7472278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 9045086 - 9045153
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  9045086 aatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaataatcctagt 9045153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 30441434 - 30441367
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||    
T  30441434 aatatcggaacttttttagcttctccatttttaatgtcccggacgttagcacgggtaatagtcctagt 30441367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 22002886 - 22002823
Alignment:
Q  17 tcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||    
T  22002886 tcagaacttttttagcttttccatttttaatgtcccaggcgttaacacgggtaaaagtcctagt 22002823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 30442734 - 30442667
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||| |||||| ||| || |||||||||||||||||||||||||||||||| |||||||||    
T  30442734 aatatcggaacatttttaacttttccatttttaatgtcccgggcgttagcacgggtaatagtcctagt 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 36971137 - 36971199
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagttt 82  Q
    ||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||  |||||||    
T  36971137 gaacttttttaacttctccatttttaatatcccgggcggtagcacgggtaaaagatctagttt 36971199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 26836438 - 26836399
Alignment:
Q  43 ttaatgtcccgggcgttagcacgggtaaaagtcctagttt 82  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  26836438 ttaatgtcccgggcggtagcacgggtaaaagtcctagttt 26836399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 22004623 - 22004578
Alignment:
Q  28 ttagcttctctatttttaatgtcccgggcgttagcacgggtaaaag 73  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||    
T  22004623 ttagcttctccatttttaatgtcccgggcggtagcacaggtaaaag 22004578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 4734918 - 4734874
Alignment:
Q  30 agcttctctatttttaatgtcccgggcgttagcacgggtaaaagt 74  Q
    |||||||| ||| |||||||| |||||| ||||||||||||||||    
T  4734918 agcttctccattgttaatgtctcgggcggtagcacgggtaaaagt 4734874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 6752607 - 6752659
Alignment:
Q  168 aagtggtaatcctaatcagcattccactttgtaattcaaattttcctcccaca 220  Q
    |||| ||||||||||||||||||||||    |||||||||||| |||||||||    
T  6752607 aagttgtaatcctaatcagcattccacaacctaattcaaatttccctcccaca 6752659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 48850729 - 48850855
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcctaagtggtaatc 178  Q
    |||||||||||||||||| || |||||||||   |||||||||||  ||||||||||||||||||||| | |||||||||| |||| ||||||| |||||    
T  48850729 tttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaatttttccctccattatgttagcattaactccttctaagtgctaatc 48850828  T
Q  179 ctaatcagcattccactttgtaattca 205  Q
    |||||||||||| ||||||| ||||||    
T  48850829 ctaatcagcatttcactttgaaattca 48850855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 1264885 - 1264953
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1264885 aatatcggaatttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 1264953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 48847053 - 48846985
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  48847053 aatatcggaatttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 48846985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 26906605 - 26906538
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  26906605 aatatcggaacttttttaccttctccatttttaatgtcccgggcggtagcacgggtaaaagtcctagt 26906538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 43070220 - 43070151
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagttt 82  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||| ||||| ||| |||||||||||    
T  43070220 aatatcggaacttttttagcttctccatttttaatgtcccggacgttaacacggataatagtcctagttt 43070151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 14237176 - 14237244
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| ||| ||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||    
T  14237176 aatatcggaatttttttaacttttccatttttaatgtcccgagcgttagcacgggtaatagtcctagtt 14237244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 20077409 - 20077342
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccat 146  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||   |||||||| ||||||||||||    
T  20077409 tttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccat 20077342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 39742361 - 39742280
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccattgtattagcattaa 160  Q
    |||||| |||||||||||||| |||||||||   | |||||||||  |||||||| ||||||||| ||| | ||||||||||    
T  39742361 tttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctcgattatgttagcattaa 39742280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 30061502 - 30061566
Alignment:
Q  87 ctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccattgta 150  Q
    ||||||||||| || ||||||||| || |||||||||  || |||||| ||||||||||||||||    
T  30061502 ctaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgta 30061566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 32663 - 32731
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32663 aatatcagaactttgttagcttctccatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 32731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 27535338 - 27535270
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  27535338 aatatcagaacttttttagcttctccatttttaatgtcccgagcgttagcacgggtaaaagtcctagtt 27535270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 14672411 - 14672345
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctag 79  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  14672411 aatatcggaacttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtcctag 14672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 8164081 - 8164141
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaag 73  Q
    |||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  8164081 aatatcagaacttttttaacttctccatttttaatgtcccgggcggtagcacgggtaaaag 8164141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 5662531 - 5662583
Alignment:
Q  28 ttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  5662531 ttagcttctccatttttaatgtcctgggcgttagcacgggcaaaagtcctagt 5662583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 11730996 - 11731056
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||| ||||| ||||||    
T  11730996 gaacttttttagcttctccatttttaatgtctcgggcggtagcacgggcaaaagacctagt 11731056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 23741308 - 23741368
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||| ||||| ||||||    
T  23741308 gaacttttttagcttctccatttttaatgtctcgggcggtagcacgggcaaaagacctagt 23741368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 23741405 - 23741465
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||| ||||| ||||||    
T  23741405 gaacttttttagcttctccatttttaatgtctcgggcggtagcacgggcaaaagacctagt 23741465  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 31098631 - 31098579
Alignment:
Q  28 ttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||| |||||||||  |||||||||||||||||| ||||||||||||    
T  31098631 ttagcttctccatttttaataccccgggcgttagcacgggcaaaagtcctagt 31098579  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 26083906 - 26083973
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccat 146  Q
    |||||| ||||||||||| ||||||||| ||||| |||||||||   |||||||| ||||||||||||    
T  26083906 tttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccat 26083973  T

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Target: scaffold0596 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 1623 - 1691
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  1623 aatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaatagtcctagtt 1691  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 31891320 - 31891253
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||| |||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  31891320 aatatcggaacttttttagcttcttcatttttaatgtcccgggcattagcacgggtaaaagtcctagt 31891253  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 33043192 - 33043138
Alignment:
Q  28 ttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagttt 82  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||    
T  33043192 ttagcttctccatttttaatgtctcgggcgttagcacgggcaaaagtcctagttt 33043138  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 26840185 - 26840262
Alignment:
Q  299 ctcaattcattcttcaattccaacgtactgataccacttcatcaa---tttccttttcatttcctccctactctcatc 373  Q
    ||||||||||||| |||||| |||  ||||||||||||||||||    ||||||||||||||||||||| ||||||||    
T  26840185 ctcaattcattctccaattcgaacacactgataccacttcatcatcagtttccttttcatttcctccctcctctcatc 26840262  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 26840418 - 26840545
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcctaagtggtaatc 178  Q
    |||||||||||||||||||||||||||| ||   | |||||||||  |||||| |||||||||||    | ||| |||||| |||| |||||||  | ||    
T  26840418 tttctttctaaagcttgtttggtcaagccatcattaaccctaatcttaacctactttttccctcccaaatcttaacattaactccttctaagtgtaattc 26840517  T
Q  179 ctaatcagcattccactttgtaattcaa 206  Q
    ||||||| ||||||||||| ||||||||    
T  26840518 ctaatcaacattccactttctaattcaa 26840545  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 26840618 - 26840695
Alignment:
Q  299 ctcaattcattcttcaattccaacgtactgataccactt---catcaatttccttttcatttcctccctactctcatc 373  Q
    ||||||||||||| |||||| |||  |||||||||||||   ||||| ||||||||||||||||||||| ||||||||    
T  26840618 ctcaattcattctccaattcgaacacactgataccactttatcatcagtttccttttcatttcctccctcctctcatc 26840695  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2918421 - 2918371
Alignment:
Q  32 cttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagttt 82  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  2918421 cttctccatttttaatgtcccgggcggtagcacgggtaaaagacctagttt 2918371  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 21999194 - 21999134
Alignment:
Q  20 gaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagt 80  Q
    |||||||||||| || |  |||||||||||||||| ||||||||||| |||| ||||||||    
T  21999194 gaacttttttaggtttttcatttttaatgtcccggacgttagcacggataaacgtcctagt 21999134  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 7868015 - 7867944
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccattgta 150  Q
    |||||| ||||||||| | |||||||||||| || |||||||||  || |||||| ||||||||||||||||    
T  7868015 tttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgta 7867944  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 26839992 - 26840119
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcctaagtggtaatc 178  Q
    ||||||||||||| ||||||| |||||| ||   | |||||||||  |||||| |||||||||||    | ||| |||||| |||| |||||||  | ||    
T  26839992 tttctttctaaagtttgtttgatcaagccatcattaaccctaatcttaacctactttttccctcccaaatcttaacattaactccttctaagtgtaattc 26840091  T
Q  179 ctaatcagcattccactttgtaattcaa 206  Q
    ||||||| ||||||||||| ||||||||    
T  26840092 ctaatcaacattccactttctaattcaa 26840119  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 48289909 - 48289991
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtttctttctaaagctt 95  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||| ||| | ||||||    
T  48289909 aatatcagaatttttttagcttctccatttttaatgtcccggacgttaacacgggtaaaagtcctaattttttttttaagctt 48289991  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 29861305 - 29861237
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| |||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||    
T  29861305 aatatcggaacttttttagcttcttcgtttttaatgtcccgagcgttagcacgggtaaaagtcctagtt 29861237  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 7810064 - 7810175
Alignment:
Q  94 ttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccattgtattagcattaa-tcctcc--taagtggtaatcctaatcagcatt 190  Q
    |||||||||||||||||   |||||||||||  ||||||||||||||||||||||| || | ||||| |||| |  |||||| |||||||||||| ||||    
T  7810064 ttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccattgt-ttcggattaactccttctataagtgctaatcctaatcaacatt 7810162  T
Q  191 ccactttgtaatt 203  Q
    |||||||| ||||    
T  7810163 ccactttgaaatt 7810175  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 2827211 - 2827257
Alignment:
Q  174 taatcctaatcagcattccactttgtaattcaaattttcctcccaca 220  Q
    ||||| || |||||||||||||||||||||||||||| |||||||||    
T  2827211 taatcttagtcagcattccactttgtaattcaaatttccctcccaca 2827257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 6898819 - 6898738
Alignment:
Q  80 tttctttctaaagcttgtttggtcaagctatatcttaccctaatccaaacctaat-ttttccctccattgtattagcattaa 160  Q
    |||||| |||||||||||||| |||||||||   | |||||||||  |||||||| |||||| |||||||| ||||||||||    
T  6898819 tttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccattgtgttagcattaa 6898738  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 32584947 - 32584898
Alignment:
Q  24 ttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaag 73  Q
    ||||||| |||||| ||||||||||||||||||| ||||||| |||||||    
T  32584947 ttttttaacttctcaatttttaatgtcccgggcggtagcacgagtaaaag 32584898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 21207436 - 21207384
Alignment:
Q  30 agcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagttt 82  Q
    ||||| || ||| ||||||||||||||| |||||||||||||||| |||||||    
T  21207436 agcttttccattgttaatgtcccgggcggtagcacgggtaaaagtactagttt 21207384  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 10427706 - 10427648
Alignment:
Q  88 taaagcttgtttggtcaagctatatcttaccctaatccaaacctaatttttccctccat 146  Q
    ||||| |||||||||||||| ||||| |||||||||   |||||||| |||||||||||    
T  10427706 taaaggttgtttggtcaagcaatatcataccctaattttaacctaatatttccctccat 10427648  T

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Target: scaffold0035 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 37234 - 37302
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtt 81  Q
    |||||| |||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||    
T  37234 aatatcggaacttttttagcttcttcatttttaatgtcccgggtgttagcacgggtaacagtcctagtt 37302  T

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Target: scaffold0045 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 10153 - 10083
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtcctagtttc 83  Q
    ||||||||||| ||||||| ||||| |||||||||||||| |||| ||||||||||||||| |||||||||    
T  10153 aatatcagaacatttttagtttctccatttttaatgtcccaggcgatagcacgggtaaaagacctagtttc 10083  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 25226932 - 25226997
Alignment:
Q  13 aatatcagaacttttttagcttctctatttttaatgtcccgggcgttagcacgggtaaaagtccta 78  Q
    |||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||    
T  25226932 aatatcggaacttttttaacttttccatttttaatgtcccgggcgttagcacgggtaatagtccta 25226997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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