View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999_low_4 (Length: 311)
Name: NF0999_low_4
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26315770 - 26315575
Alignment:
| Q |
1 |
tttgttcaatcaactctttcccatcatgccattgaactatctcatggtaagcctttgatttactcgaacatttgtgttttatgctctannnnnnnncaaa |
100 |
Q |
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| T |
26315770 |
tttgttcaatcaactctttcccaccatgccattgaactatctcatggtaagcctttgatttactcgaacatttgtgttttatgctctattttttttcaaa |
26315671 |
T |
|
| Q |
101 |
tgatatatctctttgccccctctaatctattc-----taatataatataatataatctacattgtgtttatatgacataaatattatctaaccctc |
191 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26315670 |
tgatatatctttttgccccctctaatctattctaatataatataatataatataatctacattgtgtttatatgacataaatattaactaaccctc |
26315575 |
T |
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