View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10000_1 (Length: 519)
Name: NF10000_1
Description: NF10000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10000_1 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 14 - 492
Target Start/End: Complemental strand, 30666201 - 30665723
Alignment:
| Q |
14 |
agaagctcttccaaatatgctcagtatatagcatatgttgtgctacataatcttctaactaatttgatgttgaaattgtgttacagccccatcatgatga |
113 |
Q |
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| T |
30666201 |
agaagctcttccaaatatgctcagtatatagcatatgttgtgctacataatcttctacataatttgatgttgaaattgtgttacagccccatcatgatga |
30666102 |
T |
|
| Q |
114 |
gtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatcaggaagggaaagatgtg |
213 |
Q |
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| T |
30666101 |
gtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatcaggaagggaaagatgtg |
30666002 |
T |
|
| Q |
214 |
ttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaatgccacactcatgaac |
313 |
Q |
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| T |
30666001 |
ttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaatgccacactcatgaac |
30665902 |
T |
|
| Q |
314 |
attgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccggtaatgatttctcaacac |
413 |
Q |
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| T |
30665901 |
attgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccggtaacgatttctcaacac |
30665802 |
T |
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| Q |
414 |
tttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagagaagaccgtattggtgtctg |
492 |
Q |
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| T |
30665801 |
tttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagagaagaccgtattggtgtctg |
30665723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 97 - 489
Target Start/End: Complemental strand, 34435480 - 34435088
Alignment:
| Q |
97 |
cagccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatc |
196 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |||| |||||| | ||||| | ||||| || |
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| T |
34435480 |
cagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataata |
34435381 |
T |
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| Q |
197 |
aggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtga |
296 |
Q |
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| T |
34435380 |
agaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaa |
34435281 |
T |
|
| Q |
297 |
atgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccgg |
396 |
Q |
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| T |
34435280 |
atgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcacgtgtgcctatcattgttactgg |
34435181 |
T |
|
| Q |
397 |
taatgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagagaagaccgtattggtgt |
489 |
Q |
| |
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||||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |
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| T |
34435180 |
taatgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctacaagagaagatcgtattggtgt |
34435088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 98 - 468
Target Start/End: Complemental strand, 6853850 - 6853480
Alignment:
| Q |
98 |
agccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatca |
197 |
Q |
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||||| || ||||||||||| ||||| | ||||||||||||||||||||||| ||||| |||| || || || |||||||| || | |||||||||| |
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| T |
6853850 |
agccctataatgatgagtgccggagaattggaaagtggaaatgcaggagagcctgcaaagttgattaggcaaaggtaccgtgaggcgtccgacattatca |
6853751 |
T |
|
| Q |
198 |
ggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaa |
297 |
Q |
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| T |
6853750 |
gaaaaggaaagatgtgctgtctcttcatcaatgatcttgatgcaggagctggtagaatgggtggcactactcaatacacagtcaacaaccagatggtaaa |
6853651 |
T |
|
| Q |
298 |
tgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccggt |
397 |
Q |
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| T |
6853650 |
tgcaaccctcatgaacattgctgacaaccctaccaatgttcaacttcccggtatgtacaacaaagaagagaatgcccgcgtccctatcatcgtcactggc |
6853551 |
T |
|
| Q |
398 |
aatgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctac |
468 |
Q |
| |
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||||| ||||| || | ||||||||| | || |||||||| |||||||| |||||||||||||| ||||| |
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| T |
6853550 |
aatgacttctctacgttgtatgctcctttaattcgtgatggacgtatggaaaaattctactgggcacctac |
6853480 |
T |
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