View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10000_low_1 (Length: 283)
Name: NF10000_low_1
Description: NF10000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10000_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 383310 - 383074
Alignment:
| Q |
24 |
accattcaacttcattttcttacctctcaaaaaccctaattcaaaatcgagattctattttgtgtattattcctccaagttttttcagtttaaaggatga |
123 |
Q |
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| T |
383310 |
accattcaacttcattttcttacctctcaaaaaccctaattcaaaatcgagattctattttgtgtattattcctccaagttttttcagtttaaaggatga |
383211 |
T |
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| Q |
124 |
aatgaaattgataatata--tatagtttggtttggttgaataaatgaaatgtaatgtaatgttagagtgtgattcaaaaaagtgtgtgcgcgacaataac |
221 |
Q |
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| T |
383210 |
aatgaaattgataatatatatatagtttggtttggttgaataaatgaaatgtaatgtagtgttagagtgtgattcaaaaaagtgtgtgcgcg-------- |
383119 |
T |
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| Q |
222 |
aataacaataacgtgaattattatgattttcattttcatttcatatgat |
270 |
Q |
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| T |
383118 |
----acaataacgtgaattattatgattttcattttcatttcatatgat |
383074 |
T |
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