View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10001_high_2 (Length: 344)
Name: NF10001_high_2
Description: NF10001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10001_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 28297385 - 28297712
Alignment:
| Q |
8 |
gagcacagatacggtgtgatatggggatagatacggttccagtagttatagtgctaaggagattggaaggagtatgggttgtatgattggaataaacaat |
107 |
Q |
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| T |
28297385 |
gagcactgatagggtgtgatatgaggatagatacggttccagtagttatagtgctaaggagattggaaggagtatgggttgtatgattggaataaacaat |
28297484 |
T |
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| Q |
108 |
ggaataatgatcttcaactactgaaacacggtc---tcattagataagagatgacttgaacaagtgtttatacgtaacggtaatggtcatcttaaaatcc |
204 |
Q |
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| T |
28297485 |
ggaataatgatcttcaactactgaaacacagtctcatcattagataaaagatgatttgaacaagtgtttatacgtaaaggtaatggtcatcttaaaatcc |
28297584 |
T |
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| Q |
205 |
agttttatgagttgtgttaaactc--aacacaaatttcaaattcttcaagatccacatgttaggtcacctaacatatatatatttaagcagcaaagcagt |
302 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
28297585 |
agttttatgagttgtgttaaactcaaaacacaaatttcaaattcttcaagatccacatgttaggtcacctagc--atatatatttaagcagcaaagcagt |
28297682 |
T |
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| Q |
303 |
agtcttgcgtgtgaggtcgacaaagaagat |
332 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28297683 |
agtcttgcgtgtgaggtcgacaaagaagat |
28297712 |
T |
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