View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10001_low_1 (Length: 424)
Name: NF10001_low_1
Description: NF10001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10001_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 147 - 422
Target Start/End: Original strand, 23963548 - 23963823
Alignment:
| Q |
147 |
cagcacttgacaactggtcggtttcgtaacatgaacaagatgcaatacaataggaaatgactgattgattgtaggatgagagatgtagtatgatgagttt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23963548 |
cagcacttgacaactggtcggtttcgtaacatgaacaagatgcaatacaataggaaatgactgattgattgtaggatgagagatgtagtatgatgaattt |
23963647 |
T |
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| Q |
247 |
ttcaatatcattgacactaaatctcataggcttaatacaataatacccatgcaggtctctataattggtacttgaaaatgtttctcgaagcagaataatc |
346 |
Q |
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| T |
23963648 |
ttcaatatcattgacactaaatctcataggcttaatacaataatacccatgcaggtctctataattggtacttgaaaatgtttctcgaagcagaataatc |
23963747 |
T |
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| Q |
347 |
taggcaccgcagtcgagaaatatgtcaaacgccatactccccggnnnnnnntgatatttacgataccttcgcttct |
422 |
Q |
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| T |
23963748 |
taggtaccgcattctagaaatatgtcaaacaccatactccccggtcaaaaatgatatttacgatacctttgcttct |
23963823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 150 - 349
Target Start/End: Complemental strand, 24001259 - 24001058
Alignment:
| Q |
150 |
cacttgacaactggtcggtttcgtaacatgaacaagatgcaatacaataggaaatgactgattgattgtaggatgagagatgtagtatgatgagtttttc |
249 |
Q |
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| T |
24001259 |
cacttgacaagtggtcggtttcgtaacatgaacacgatgcaatacaataggaaatgaatgattgattgtaggacgagagatgtagtatgatgaatccttc |
24001160 |
T |
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| Q |
250 |
aatat----cattgacactaaatctcataggcttaatacaataatacccatgcaggtctctataattggtacttgaaaatgtttctcgaagcagaataat |
345 |
Q |
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||| | |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24001159 |
aatgttatatattgacactaaatctcataggcgtaatacagtaatacccatgcagg--tctataattggtacttgaaaatgtttctcgaagtcgaataat |
24001062 |
T |
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| Q |
346 |
ctag |
349 |
Q |
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|||| |
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| T |
24001061 |
ctag |
24001058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 23963402 - 23963504
Alignment:
| Q |
1 |
tcactctttttattgagaattcctgtgttctgaaatctgcaaaaaatatatcattatgttacatgcgtaatatttttaatcatatttagttttaatggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23963402 |
tcactctttttattgagaattcctgtgttctgaaatctgcaaaaaatatatcattatgttacatgcgtaatatttttaatcatatttagttttaatggca |
23963501 |
T |
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| Q |
101 |
cgt |
103 |
Q |
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||| |
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| T |
23963502 |
cgt |
23963504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24001408 - 24001306
Alignment:
| Q |
1 |
tcactctttttattgagaattcctgtgttctgaaatctgcaaaaaatatatcattatgttacatgcgtaatatttttaatcatatttagttttaatggca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24001408 |
tcactctttttattgagaattcctgtgttctgaaatctgcagaaaaaatataattatgttacatgcgtaatatttttaatcgtatttagttttaatggca |
24001309 |
T |
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| Q |
101 |
cgt |
103 |
Q |
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||| |
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| T |
24001308 |
cgt |
24001306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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