View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10002_high_1 (Length: 661)

Name: NF10002_high_1
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10002_high_1
NF10002_high_1
[»] chr4 (1 HSPs)
chr4 (1-646)||(39256126-39256771)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Original strand, 39256126 - 39256771
Alignment:
Q  1 cttaccaacagatgaaacatgagacagatttgtaatctgaaaagcacccgccggcgacgacatcgacggttgtttgttgttgtcgtcgccagtgagtgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39256126 cttaccaacagatgaaacatgagacagatttgtaatctgaaaagcacccgccggagacgacatcgacggttgtttgttgttgtcgtcgccagtgagtgaa 39256225  T
Q  101 gaaatgaaagaattaccagcagaagagtatgaaaaattaagagtttttgaagaatcatttctcttgattataggacggtgaagggtagtagaaacagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39256226 gaaatgaaagaattaccagcagaagagtatgaaaaattaagagtttttgaagaatcatttctcttgattataggacggtgaagggtagtagaaacagttg 39256325  T
Q  201 gtggaatctgttgcaaaggtgtagcgttgaaaatcattggttcagaaggttgaaattgtagggtttgtgatggtggtggttgtggttgtggtaaaggagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39256326 gtggaatctgttgcaaaggtgtagcgttgaaaatcattggttcagaaggttgaaattgtagggtttgtgatggtggtggttgtggttgtggtaaaggagc 39256425  T
Q  301 ttttctgaaacgagcatgaccagttctagttttttcaagcagtgaaataacacgtttgaacttggaaacagctatgtctgcaacagctttgcaatctctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39256426 ttttctgaaacgagcatgaccagttctagttttttcaagcagtgaaataacacgtttgaacttggaaacagctatgtctgcaacagctttgcaatctctt 39256525  T
Q  401 tctatatccatagtagggttgttgttattgttgttagggtttgaaggtgaaaaggaagtggaagaagatgaagaaggttggtatttgtgacgtgcttctg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39256526 tctatatccatagtagggttgttgttattgttgttagggtttgaaggtgaaaaggaagaggaagaagatgaagaaggttggtatttgtgacgtgcttctg 39256625  T
Q  501 agagaagttttatgagtttttcaacactttctaaaccagaagctgcttcttggacagcattttcttctgctttggtagtgaaagattggtttctgttgta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39256626 agagaagttttatgagtttttcaacactttctaaaccagaagctgcttcttggacagcattttcttctgctttggtagtgaaagattggtttctgttgta 39256725  T
Q  601 gcctgtcatgagctccacggccattgttgtggcaacaagaccatag 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39256726 gcctgtcatgagctccacggccattgttgtggcaacaagaccatag 39256771  T

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