View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_high_11 (Length: 238)
Name: NF10002_high_11
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_high_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33994324 - 33994561
Alignment:
| Q |
1 |
tttcataggtcagtactaaatgttaggctaaattacannnnnnngcagtgttagggtgtcaaatgaactaggcagagggagttccaaggcagcaaaattc |
100 |
Q |
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| T |
33994324 |
tttcataggtcagtactaaatgttaggctaaattacatttttttgcagtgttagggtgtcaaatgaactaggcagagggagttccaaggcagcaaaattc |
33994423 |
T |
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| Q |
101 |
tccattgtgataacagtgctcacatcattttccattggatttgtgctgttcttgatctttctattcctaaaaggaagacttgcttacattttcaccccta |
200 |
Q |
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| T |
33994424 |
tccattgtgataacagtgctcacatcattttccattggatttgtgctgttcttgatctttctattcctaaaaggaagacttgcttacattttcaccccta |
33994523 |
T |
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| Q |
201 |
atccagatgtggcaaatgcagttggagatctatcacct |
238 |
Q |
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| T |
33994524 |
atccagatgtggcaaatgcagttggagatctatcacct |
33994561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 33984970 - 33985162
Alignment:
| Q |
46 |
cagtgttagggtgtcaaatgaactaggcagagggagttccaaggcagcaaaattctccattgtgataacagtgctcacatcattttccattggatttgtg |
145 |
Q |
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| T |
33984970 |
cagtgttagggtggcaaacgaacttggaggaggggattcgaaggcagcaaaattttccattgtgataacactgctgacatcatttttcataggatttgtg |
33985069 |
T |
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| Q |
146 |
ctgttcttgatctttctattcctaaaaggaagacttgcttacattttcacccctaatccagatgtggcaaatgcagttggagatctatcacct |
238 |
Q |
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| T |
33985070 |
ctattcttgatctttctattcctaaaggaaagacttgcttacattttcaccccagacccagatgtggctaaagcagttggtgatttatcacct |
33985162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 9235810 - 9235620
Alignment:
| Q |
45 |
gcagtgttagggtgtcaaatgaactaggcagagggagttccaaggcagcaaaattctccattgtgataacagtgctcacatcattttccattggatttgt |
144 |
Q |
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| T |
9235810 |
gcagtgttcgagtggcaaatgaacttggaagaggaagttcaagagatgcaaaattttcaattaagatatcagttctcacatcatttgccattggatgcat |
9235711 |
T |
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| Q |
145 |
gctgttcttgatctttctattcctaaaaggaagacttgcttacattttcacccctaatccagatgtggcaaatgcagttggagatctatca |
235 |
Q |
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| T |
9235710 |
ttttttctttgtcttcttattcttgaaggaaagacttgcttacattttcactacaaatcctgatgtggctgatgctgttggagatttatca |
9235620 |
T |
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