View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_high_4 (Length: 355)
Name: NF10002_high_4
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 260006 - 259758
Alignment:
| Q |
7 |
attttaaaattatctagaaagagatgaagagataaatagatttaataaattctgggttattgattttagatctgaaacttcatctgaaaagatgaaaagg |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
260006 |
attttaaacttatctagaaagagatgaagagataaatacatttaataaattctgggttattgatttttgatctgaaacttcatctgaaaagatgaaaagg |
259907 |
T |
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| Q |
107 |
tttnnnnnnnnttatgggttttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcata |
206 |
Q |
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| T |
259906 |
tttaaaaaaaattatgggttttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcata |
259807 |
T |
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| Q |
207 |
cgaggaattagatgttgaagccatggtacaattactaacaagaagaaga |
255 |
Q |
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| T |
259806 |
cgaggaattagatgttgaagccatggtataattaccaacaagaagaaga |
259758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 259544 - 259479
Alignment:
| Q |
281 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatccctt |
346 |
Q |
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| T |
259544 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatccctt |
259479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 27225877 - 27225630
Alignment:
| Q |
7 |
attttaaaattatctagaaagagatgaagagataaatagatttaataaattctgggttattgattttagatctgaaacttcatctgaaaagatgaaaagg |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27225877 |
attttaaacttatctagaaagagatgaagagataaatacatttaataaattctgggttattgatttttgatctgaaacttcatctgaaaagatgaaaagg |
27225778 |
T |
|
| Q |
107 |
tttnnnnnnnnttatgggttttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcata |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27225777 |
tttaaaaaaa-ttatgggttttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcata |
27225679 |
T |
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| Q |
207 |
cgaggaattagatgttgaagccatggtacaattactaacaagaagaaga |
255 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
27225678 |
cgaggaattagatgttgaagccatggtataattaccaacaagaagaaga |
27225630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 27225416 - 27225351
Alignment:
| Q |
281 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatccctt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27225416 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatccctt |
27225351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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