View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_high_9 (Length: 246)
Name: NF10002_high_9
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 6268856 - 6268631
Alignment:
| Q |
3 |
cgagtttggtggtacaagtgtacataatcttggggtcgttgtttacccttacttggagacgaagtttgatgagctgtctgcaataattgtagtacgagaa |
102 |
Q |
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| T |
6268856 |
cgagtatggtcgtacaagtgtacataatcttggggtcgttgtttacccttacttggagacgaagtttgatgagctgtctgcaataattgtagtacgagaa |
6268757 |
T |
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| Q |
103 |
ataaaataatatgctgactacaaagagaataagacgaggttatatgatagaagaaattaccaaagaacgcaacttgtagtggttggactcctacctaaaa |
202 |
Q |
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| T |
6268756 |
ataaaataatatgctgattacaaagagaataagacgaggttatatgatagaagaaattaccaaaaaacacaacttgtagtggttggactactacctaaaa |
6268657 |
T |
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| Q |
203 |
agtacaaccacattgtgatgccaagg |
228 |
Q |
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| T |
6268656 |
agtacaaccacattgtggtgccaagg |
6268631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 32090956 - 32090812
Alignment:
| Q |
41 |
ttgtttacccttacttggagacgaagtttgatgagctgtctgcaataattgtagtacgagaaataaaataatatgctgactacaaagagaataagacgag |
140 |
Q |
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| T |
32090956 |
ttgtttgcctttacgtggggacgaagttcaatgagttgtctccaatgattgtagtacgaggaataaaataatatgtttagttaaaagagaataagacaag |
32090857 |
T |
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| Q |
141 |
gttatatgatagaagaaattaccaaagaacgcaacttgtagtggt |
185 |
Q |
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| T |
32090856 |
gatgtatcatatgagaaattaccaaagggcgcaacttgtagtggt |
32090812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 2814272 - 2814318
Alignment:
| Q |
145 |
tatgatagaagaaattaccaaagaacgcaacttgtagtggttggact |
191 |
Q |
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| T |
2814272 |
tatgataggagaaattaccaaaggacacaacttgtagtggttggact |
2814318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 42525508 - 42525691
Alignment:
| Q |
41 |
ttgtttacccttacttggagacgaagtttgatgagctgtctgcaataattgtagtacgagaaataaaataatatgctgactacaaagagaataagacgag |
140 |
Q |
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| T |
42525508 |
ttgtctacctttgcttggggacgaagttcgacgagatgtccctaatgattgtagtatgaggaataaaagaatatgttgagtaccaagaggataagacaag |
42525607 |
T |
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| Q |
141 |
gttatatgatagaagaaattaccaaagaacgcaacttgtagtggttggactcctacctaaaaagtacaaccacattgtgatgcc |
224 |
Q |
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| T |
42525608 |
gacgtatgctaggagagattaccaaactacacaatttgtagtggttagacttgtactataaaaggacaaccatattatgatgcc |
42525691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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