View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_low_12 (Length: 267)
Name: NF10002_low_12
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 33993859 - 33994094
Alignment:
| Q |
21 |
ctttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtac |
120 |
Q |
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| T |
33993859 |
ctttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtac |
33993958 |
T |
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| Q |
121 |
tatatctctcattctcattcttacatttacttcaaaattttagcattaagattcatatttaaactaatctattgacttaatcaaattattatttttgcag |
220 |
Q |
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| T |
33993959 |
tatatctctcattctcattcttacatttacttcaaaa-tttagcattaagattcatatttaaactaatctattgacttaatcaaattattatttttgcag |
33994057 |
T |
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| Q |
221 |
cctcaacatcaatgggtgggaaatgatgatagccctt |
257 |
Q |
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| T |
33994058 |
cctcaacatcaatgggtgggaaatgatgatagccctt |
33994094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 33984293 - 33984392
Alignment:
| Q |
21 |
ctttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtac |
120 |
Q |
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| T |
33984293 |
cttttacagtcttgaaatatggtacaacacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggtac |
33984392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 33984477 - 33984556
Alignment:
| Q |
178 |
tttaaactaatctattgacttaatcaaattattatttt-tgcagcctcaacatcaatgggtgggaaatgatgatagccct |
256 |
Q |
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| T |
33984477 |
tttaaactaatttattgatttaatcaaattatcattttttgcagcctcaacatcaatggcttggaaacgatgatagccct |
33984556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 34016098 - 34016190
Alignment:
| Q |
27 |
cagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggta |
119 |
Q |
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| T |
34016098 |
cagtcttgagctatggtacaacacggtattgattcttttaacaggcaacatggaaaatgcagagattcaaattgatgctctagccatatggta |
34016190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 30096372 - 30096440
Alignment:
| Q |
59 |
ttcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtactatatct |
127 |
Q |
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| T |
30096372 |
ttcttctaaccgaaaacatggaagatgctaagatttccgttgatgctcggaccatatggtactatatct |
30096440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 34005965 - 34006057
Alignment:
| Q |
27 |
cagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggta |
119 |
Q |
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| T |
34005965 |
cagtcttgagctatggtacaacacaatattggttcttttgacagggaacatgaaaaatgcagaggttgaaattgatgcactatctatatggta |
34006057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 9215949 - 9215897
Alignment:
| Q |
210 |
tatttttgcagcctcaacatcaatgggtgggaaatgatgatagccctttgctt |
262 |
Q |
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| T |
9215949 |
tatttttgcagcctaaacatcaatggttgggaaatgatgattgcccttggctt |
9215897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 9236550 - 9236481
Alignment:
| Q |
21 |
ctttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgag |
90 |
Q |
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|||| |||||||||| ||||||||| |||| ||||||||||| |||| || |||||| || |||||||| |
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| T |
9236550 |
cttttacagtcttgaggtatggtacagcacaattttgattcttttaactggcaacatgaaagatgctgag |
9236481 |
T |
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