View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_low_17 (Length: 234)
Name: NF10002_low_17
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 2948679 - 2948476
Alignment:
| Q |
15 |
cacagaccctgatcttaactacttcatattccaacaggaagggaaaatattccagagttggtatccagatacattcacagagatatttgggcaacaaaat |
114 |
Q |
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| T |
2948679 |
cacagaccctgatcttaactacttcatattccaacaggaagggaaaatattccagagttggtatccagatacattcacagagatatttgggcaacaaaat |
2948580 |
T |
|
| Q |
115 |
gtaggttccttacatggttttatgtataagtaccttaagaacatgatgctcaatttgtttggtcctgaaagtcttaaaaagatgatctcagaggttgaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948579 |
gtaggttccttacatggttttatgtataagtaccttaagaacatgatgctcaatttgtttggtcctgaaagtcttaaaaagatgatctcagaggttgaac |
2948480 |
T |
|
| Q |
215 |
aagc |
218 |
Q |
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|||| |
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| T |
2948479 |
aagc |
2948476 |
T |
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