View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10002_low_19 (Length: 228)

Name: NF10002_low_19
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10002_low_19
NF10002_low_19
[»] chr3 (2 HSPs)
chr3 (18-228)||(26073116-26073326)
chr3 (66-106)||(42974825-42974865)
[»] chr5 (3 HSPs)
chr5 (66-111)||(28735820-28735865)
chr5 (66-118)||(18542218-18542270)
chr5 (65-117)||(12976659-12976711)
[»] chr2 (2 HSPs)
chr2 (76-120)||(22556236-22556280)
chr2 (76-112)||(42654363-42654398)
[»] scaffold0001 (1 HSPs)
scaffold0001 (76-118)||(398637-398679)
[»] chr6 (6 HSPs)
chr6 (65-111)||(2468479-2468525)
chr6 (66-120)||(10666627-10666681)
chr6 (73-117)||(3846259-3846303)
chr6 (66-106)||(4005137-4005177)
chr6 (73-105)||(28298802-28298834)
chr6 (73-105)||(28513239-28513271)
[»] chr4 (3 HSPs)
chr4 (65-111)||(7422169-7422215)
chr4 (65-111)||(27131679-27131725)
chr4 (65-106)||(43397111-43397152)
[»] chr1 (1 HSPs)
chr1 (66-98)||(21158043-21158075)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 26073326 - 26073116
Alignment:
Q  18 gacacatttctgatcaaagatatatctgtggtgcctgacacttgtcaaacacatgtaattacattcaattacttctactttcttaaattattacttgtgt 117  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26073326 gacacatttctgatcaaagatgtatctgtggtgtctgacacttatcaaacatatgtaattacattcaattacttctactttcttaaattattacttgtgt 26073227  T
Q  118 ctagtatattgtcatgtccaatgttcgtgtcagtgcttaattacggaaaacaaagtaagcaaagaaagcattaccgtgattaggtggaacaacaaaacta 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26073226 ctagtatattgtcatgtccaatgttcgtgtcactgcttaattacggaaaacaaagtaagcaaagaaagcattaccgtgattaggtggaacaacaaaacta 26073127  T
Q  218 agctcccacat 228  Q
    |||||||||||    
T  26073126 agctcccacat 26073116  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 42974865 - 42974825
Alignment:
Q  66 acacatgtaattacattcaattacttctactttcttaaatt 106  Q
    ||||||||| | ||||||||||||||||| |||||||||||    
T  42974865 acacatgtagtaacattcaattacttctattttcttaaatt 42974825  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 28735820 - 28735865
Alignment:
Q  66 acacatgtaattacattcaattacttctactttcttaaattattac 111  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||||    
T  28735820 acacatataattacattcaatcacttctattttcttaaattattac 28735865  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 18542218 - 18542270
Alignment:
Q  66 acacatgtaattacattcaattacttctactttcttaaattattacttgtgtc 118  Q
    |||||||| ||||||||||||||||| || ||||| ||||||||||| |||||    
T  18542218 acacatgtgattacattcaattacttgtattttctcaaattattactggtgtc 18542270  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 12976659 - 12976711
Alignment:
Q  65 aacacatgtaattacattcaattacttctactttcttaaattattacttgtgt 117  Q
    ||||||||| |||||||||| | |||| || ||||||||||||||||| ||||    
T  12976659 aacacatgtgattacattcattgacttttattttcttaaattattactggtgt 12976711  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 22556280 - 22556236
Alignment:
Q  76 ttacattcaattacttctactttcttaaattattacttgtgtcta 120  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacctgtgtcta 22556236  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 42654363 - 42654398
Alignment:
Q  76 ttacattcaattacttctactttcttaaattattact 112  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42654363 ttacattcaattacttcta-tttcttaaattattact 42654398  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 398679 - 398637
Alignment:
Q  76 ttacattcaattacttctactttcttaaattattacttgtgtc 118  Q
    ||||||||||||||||| | ||||||||||||||| |||||||    
T  398679 ttacattcaattacttcaattttcttaaattattatttgtgtc 398637  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 2468479 - 2468525
Alignment:
Q  65 aacacatgtaattacattcaattacttctactttcttaaattattac 111  Q
    |||||||||  ||||||||||||||||| | ||||||||||||||||    
T  2468479 aacacatgtggttacattcaattacttccattttcttaaattattac 2468525  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 10666627 - 10666681
Alignment:
Q  66 acacatgtaattacattcaattacttctactttcttaaattattacttgtgtcta 120  Q
    ||||||| |||| |||||||||||||||| ||||| ||||||||| | |||||||    
T  10666627 acacatgaaatttcattcaattacttctattttctcaaattattattagtgtcta 10666681  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 3846303 - 3846259
Alignment:
Q  73 taattacattcaattacttctactttcttaaattattacttgtgt 117  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||    
T  3846303 taattacattcaattacttaaattttctcaaattattacttgtgt 3846259  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 4005177 - 4005137
Alignment:
Q  66 acacatgtaattacattcaattacttctactttcttaaatt 106  Q
    ||||||||||||||||||||| ||||||| ||| |||||||    
T  4005177 acacatgtaattacattcaatcacttctattttattaaatt 4005137  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 28298802 - 28298834
Alignment:
Q  73 taattacattcaattacttctactttcttaaat 105  Q
    |||||||||||||||| ||||||||||||||||    
T  28298802 taattacattcaattatttctactttcttaaat 28298834  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 28513271 - 28513239
Alignment:
Q  73 taattacattcaattacttctactttcttaaat 105  Q
    |||||||||||||||| ||||||||||||||||    
T  28513271 taattacattcaattatttctactttcttaaat 28513239  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 7422215 - 7422169
Alignment:
Q  65 aacacatgtaattacattcaattacttctactttcttaaattattac 111  Q
    ||||||| |||||||||||||| ||||||| ||||| ||||||||||    
T  7422215 aacacatataattacattcaatcacttctattttctcaaattattac 7422169  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 27131679 - 27131725
Alignment:
Q  65 aacacatgtaattacattcaattacttctactttcttaaattattac 111  Q
    |||||||||  ||||||||||||||||| | ||||||||||||||||    
T  27131679 aacacatgtggttacattcaattacttccattttcttaaattattac 27131725  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 43397152 - 43397111
Alignment:
Q  65 aacacatgtaattacattcaattacttctactttcttaaatt 106  Q
    ||||||||| |||||||||||||||| ||| |||||||||||    
T  43397152 aacacatgtgattacattcaattactgctattttcttaaatt 43397111  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 21158075 - 21158043
Alignment:
Q  66 acacatgtaattacattcaattacttctacttt 98  Q
    ||||||||| |||||||||||||||||||||||    
T  21158075 acacatgtagttacattcaattacttctacttt 21158043  T

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