View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_low_2 (Length: 557)
Name: NF10002_low_2
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 21 - 542
Target Start/End: Complemental strand, 5301247 - 5300726
Alignment:
| Q |
21 |
aatgcttatattcaaaatcttaaacacgacagagaacaaatgtttctggaaattcagagaaaggaagaggtgaagaaaatgaatgagataacatcacagt |
120 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5301247 |
aatgcttatgttcaaaatcttaaacacgacagagaacaaatgtttctggaaattcagagaaaggaagaggtgaagaaaatgaatgagataacatcacagt |
5301148 |
T |
|
| Q |
121 |
acatgaagggtcatttggaaactttggaaaagaaacatcaaagtgtgctctcttctgttgatcaagtgctgaagaaacctgggaaaaaggagcgaaaaag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
5301147 |
acatgaagggtcatttggaaactttggaaaagaaacatcaaagtgtgctctcttctgttggtcaagtgctgaagaaacctgggaaaaaggagcaaaaaag |
5301048 |
T |
|
| Q |
221 |
gaggattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctcatgtaatacacaaggaaaacgacccgagtgtgtct |
320 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
5301047 |
gaagattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctcatgtaatacacaaagaaaacgacccgggtgtgtct |
5300948 |
T |
|
| Q |
321 |
cgtctatcattaaacttggaacaattggatctgctcgactcatcaatgacattttgggaggagattacaaatgatgttggtgccgaagttcagcccaagt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5300947 |
cgtctatcattaaacttggaacaattggatctgctcgactcatcaatgacattttgggaggagattacaaatgatgttggtgccgaagttcagcccaagt |
5300848 |
T |
|
| Q |
421 |
cactagaactcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactga |
520 |
Q |
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| T |
5300847 |
cactagaagtcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactga |
5300748 |
T |
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| Q |
521 |
gctggatgtaatcgttgttcct |
542 |
Q |
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| T |
5300747 |
gctggatgtaatcgttgttcct |
5300726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 52000304 - 52000369
Alignment:
| Q |
457 |
ttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgagc |
522 |
Q |
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| T |
52000304 |
ttgttcctgatcctgttgcaactaagccagtgctagttgttgttcctaatcatgttgcaactgagc |
52000369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 523
Target Start/End: Original strand, 15621297 - 15621415
Alignment:
| Q |
405 |
gaagttcagcccaagtcactagaactcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattccta |
504 |
Q |
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||||||| ||||||||||| ||| |||||||||| ||||| |||||||||||| |||||||| |||| ||| | | |||||| ||||||||| |
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| T |
15621297 |
gaagttcgccccaagtcactggaaagtgacatgaactatgtgccattggtagttgttcttgatccagatgcatctgggccgaatgtagctgttattcccg |
15621396 |
T |
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| Q |
505 |
atcacgttgcaactgagct |
523 |
Q |
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||| |||||||||||||| |
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| T |
15621397 |
atctagttgcaactgagct |
15621415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 15621096 - 15621168
Alignment:
| Q |
214 |
gaaaaaggaggattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctca |
286 |
Q |
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||||||||||||||| ||||| |||| ||||| | ||||||| | || |||||||||||| |||||||||| |
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| T |
15621096 |
gaaaaaggaggattcaaagaaagaatcatttttataatgtagcaatcattgaagatcatgtttgaacttctca |
15621168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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