View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10002_low_21 (Length: 226)
Name: NF10002_low_21
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_low_21 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 52891499 - 52891274
Alignment:
| Q |
1 |
aggtggttccgacggaaacaagattgaacgtgctggagaagtgctttgtggctgagctttcatatcacagggaggcaaagtcagtgcaaaatagcttagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52891499 |
aggtggttccgacggaaacaagattgaaggtgctggagaagtgctttgtggctgagctttcatatcacagggaggcaaagtcagtgcaaaatagcttagt |
52891400 |
T |
|
| Q |
101 |
gatggaagggattaagaatgttagggtgacaactatgggtgataatctggtgctactgcaagtcgaggatccggtgcgattcgaactagataggaaggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52891399 |
gatggaagggattaagaatgttagggtgacaactatgggtgataatctggtgctactgcaagtggaggatccggtgcgattcgaactagataggaaggaa |
52891300 |
T |
|
| Q |
201 |
catgggcagtggtggtcagttgtgtt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
52891299 |
catgggcagtggtggtcagttgtgtt |
52891274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University