View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_low_3 (Length: 509)
Name: NF10002_low_3
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 173 - 503
Target Start/End: Complemental strand, 43263328 - 43262998
Alignment:
| Q |
173 |
ataggtgggatcttcagcttgaacacgctacctacaagaatcgacagcatcttgaccttccgagcaggtgaaaactgaacctttttggttaattttatat |
272 |
Q |
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| T |
43263328 |
ataggtgggatcttcagcttgaacacgctacctacaagaattgacaacatcttgaccttccgagcaggtgaaaactgaacctttttggttaattttgtat |
43263229 |
T |
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| Q |
273 |
tcatgaaattagtgcatcgtgaaattagcctatcatgagatgacgtgttgcttgacgatctttattatgtttttcatttgttgttattttgaagtttcaa |
372 |
Q |
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| T |
43263228 |
tgatgaaattagtgcatcgtgaaattagcctatcacgaggtgatgtgttacttgacgatctttattatgtttttcatttgttgttattttgaagtttcaa |
43263129 |
T |
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| Q |
373 |
ttattacggcttcaaagtgcatcgtgaatgagctaaaggatttgcagaaggacccttcaacatcatggagtacaagttatcttctagatctagttccctt |
472 |
Q |
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| T |
43263128 |
ttattacggcttcaaagtgcatcgtgaatgagctaaaggatttgtagaaggacccttcaacatcatgcagtacaggttatcttctagatctagttccctt |
43263029 |
T |
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| Q |
473 |
tctttattttccctttttcttatctgtgctg |
503 |
Q |
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| T |
43263028 |
tctttattttccctttttcttatttgtgctg |
43262998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 43263500 - 43263394
Alignment:
| Q |
5 |
caacaacatcaatctaaatctttgttcttgttcttgaagattaaatcattaatcataacattgtttgacattctcttcttgcc---ttgttttcctaact |
101 |
Q |
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| T |
43263500 |
caacaacatcaatctaaatctttgttcttgttcttgacgattaaatcattaatcataacattgtttgacattctcttcttgccggtttgttttcctaact |
43263401 |
T |
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| Q |
102 |
cttctac |
108 |
Q |
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| T |
43263400 |
cttctac |
43263394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 330 - 503
Target Start/End: Complemental strand, 51856921 - 51856748
Alignment:
| Q |
330 |
atctttattatgtttttcatttgttgttattttgaagtttcaattattacggcttcaaagtgcatcgtgaatgagctaaaggatttgcagaaggaccctt |
429 |
Q |
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| T |
51856921 |
atctttattatgttttccatttgttgttattttgaagttccaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggaccctt |
51856822 |
T |
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| Q |
430 |
caacatcatggagtacaagttatcttctagatctagttccctttctttattttccctttttcttatctgtgctg |
503 |
Q |
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| T |
51856821 |
cattatcatgtagtacaggttatcttctagatctagttccctttctttattttccctttttcttatttgtgctg |
51856748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 351 - 503
Target Start/End: Complemental strand, 8945944 - 8945792
Alignment:
| Q |
351 |
tgttgttattttgaagtttcaattattacggcttcaaagtgcatcgtgaatgagctaaaggatttgcagaaggacccttcaacatcatggagtacaagtt |
450 |
Q |
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| T |
8945944 |
tgttgttattttgaagtttcaattataacggcttcaaagcacatcgtgaaggagctaaatgatttttagaacgacccttcattatcatgtagtacaggtt |
8945845 |
T |
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| Q |
451 |
atcttctagatctagttccctttctttattttccctttttcttatctgtgctg |
503 |
Q |
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| T |
8945844 |
atcttctagatctagttccctttctttattttccctttttcttatttgtgctg |
8945792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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