View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10002_low_4 (Length: 497)
Name: NF10002_low_4
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10002_low_4 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Complemental strand, 6099 - 5633
Alignment:
| Q |
19 |
atcaattcttagttatgtgacgaggaggaggttttgcaagatttcctccaggaagaaagctttggtctcaccagagggaggaaccacagagtcatgagcg |
118 |
Q |
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| T |
6099 |
atcaattcatagttatgtgacgaggaggaggctttgcaagatgtcctcaaggaggaaaggtttggtctcaccagagggaggaaccacagagtcatgagca |
6000 |
T |
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| Q |
119 |
ttccatagaaaaataccagggagtgtggagaattgcataagatgtttgcagccagcaatgaagatctcccttggcatcttaataatcttatctgcaggct |
218 |
Q |
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| T |
5999 |
ttccaaagaaaaataccagggagtgtggagtattgcataagatgtttgcatccagcaatgaagatctcccttggcatcttaataatcttatctgcaggct |
5900 |
T |
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| Q |
219 |
cggtgtcacccgggtcggtgctaattcctggaaggaatttttcaggagagtagtcattcgctatctttgaataaagtttcacaaattcttcagatgtttg |
318 |
Q |
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| T |
5899 |
cggtgtcacccgggtcggtgctaattcctggaaggaatttttcaggagagtagtcattcgctatctttgaataaagtttcacaaattcttcagatgtttg |
5800 |
T |
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| Q |
319 |
tacaattttagtttggttgtataacttgtagtcaaccaaattaatattgtccttgttttcccaatacaatttgcggtaatgcgaatcattttgctcggat |
418 |
Q |
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| T |
5799 |
tacaattttagtttggttgtataacttgtagtcaaccaaattaatattgtccttgttttcccaatacaatttgcggtaatgcgaatcattttgctcggat |
5700 |
T |
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| Q |
419 |
ggagcaatggacacaacattgatattcagatctctatctttcttgagatctgttataacttgcccta |
485 |
Q |
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| T |
5699 |
ggagcaatggacacaacattgatattcagatctctatctttcttgagatctgttataacttgcccta |
5633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 16334 - 16242
Alignment:
| Q |
106 |
agagtcatgagcgttccatagaaaaataccagggagtgtggagaattgcataagatgtttgcagccagcaatgaagatctcccttggcatctt |
198 |
Q |
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| T |
16334 |
agagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttggcatctt |
16242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 26502 - 26410
Alignment:
| Q |
106 |
agagtcatgagcgttccatagaaaaataccagggagtgtggagaattgcataagatgtttgcagccagcaatgaagatctcccttggcatctt |
198 |
Q |
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| T |
26502 |
agagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttggcatctt |
26410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 36668 - 36576
Alignment:
| Q |
106 |
agagtcatgagcgttccatagaaaaataccagggagtgtggagaattgcataagatgtttgcagccagcaatgaagatctcccttggcatctt |
198 |
Q |
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| T |
36668 |
agagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttggcatctt |
36576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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