View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10002_low_5 (Length: 491)

Name: NF10002_low_5
Description: NF10002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10002_low_5
NF10002_low_5
[»] chr7 (10 HSPs)
chr7 (37-176)||(44953957-44954096)
chr7 (392-432)||(5768058-5768098)
chr7 (392-432)||(25419569-25419609)
chr7 (392-432)||(39066864-39066904)
chr7 (392-432)||(47233816-47233856)
chr7 (442-480)||(5767979-5768017)
chr7 (442-480)||(25419490-25419528)
chr7 (443-480)||(47233737-47233774)
chr7 (442-480)||(44393851-44393889)
chr7 (396-432)||(44393780-44393816)
[»] chr2 (10 HSPs)
chr2 (247-377)||(29455275-29455407)
chr2 (392-480)||(43564267-43564355)
chr2 (392-477)||(29455477-29455562)
chr2 (332-377)||(43564151-43564196)
chr2 (392-432)||(7574085-7574125)
chr2 (392-432)||(41646702-41646742)
chr2 (442-480)||(7574006-7574044)
chr2 (442-480)||(16668601-16668639)
chr2 (392-432)||(16668680-16668720)
chr2 (442-480)||(41646622-41646660)
[»] chr8 (8 HSPs)
chr8 (392-480)||(918901-918989)
chr8 (392-432)||(8150485-8150525)
chr8 (392-432)||(10186462-10186502)
chr8 (392-432)||(11428136-11428176)
chr8 (442-480)||(11428061-11428099)
chr8 (442-480)||(20172141-20172179)
chr8 (340-373)||(919075-919108)
chr8 (396-432)||(20172070-20172106)
[»] scaffold0516 (1 HSPs)
scaffold0516 (392-432)||(3355-3395)
[»] chr6 (4 HSPs)
chr6 (392-432)||(13433447-13433487)
chr6 (442-480)||(13433368-13433406)
chr6 (392-432)||(16712103-16712143)
chr6 (442-480)||(16712029-16712067)
[»] chr5 (6 HSPs)
chr5 (392-432)||(36991151-36991191)
chr5 (442-480)||(36991232-36991270)
chr5 (392-432)||(21605061-21605101)
chr5 (392-428)||(37301986-37302022)
chr5 (449-480)||(37301822-37301853)
chr5 (451-480)||(21604984-21605013)
[»] chr4 (15 HSPs)
chr4 (392-432)||(2504995-2505035)
chr4 (392-432)||(46092411-46092451)
chr4 (392-432)||(46134936-46134976)
chr4 (392-432)||(53830499-53830539)
chr4 (442-480)||(2504916-2504954)
chr4 (442-480)||(34737717-34737755)
chr4 (442-480)||(46092492-46092530)
chr4 (442-480)||(46135017-46135055)
chr4 (442-480)||(53830420-53830458)
chr4 (392-432)||(20036391-20036431)
chr4 (392-432)||(34737793-34737833)
chr4 (392-432)||(5430821-5430861)
chr4 (442-480)||(2500562-2500600)
chr4 (442-484)||(21803082-21803123)
chr4 (392-432)||(2500638-2500678)
[»] chr3 (7 HSPs)
chr3 (392-432)||(35870451-35870491)
chr3 (392-432)||(48266372-48266412)
chr3 (442-480)||(52349915-52349953)
chr3 (392-432)||(52349834-52349874)
chr3 (442-480)||(35870532-35870570)
chr3 (442-480)||(48266453-48266491)
chr3 (442-480)||(26215499-26215537)
[»] chr1 (7 HSPs)
chr1 (392-432)||(13786337-13786377)
chr1 (392-432)||(22912522-22912562)
chr1 (392-432)||(25807766-25807806)
chr1 (442-480)||(13786418-13786456)
chr1 (442-480)||(22912446-22912484)
chr1 (442-480)||(25807686-25807724)
chr1 (392-432)||(23726019-23726058)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 44953957 - 44954096
Alignment:
Q  37 tgttgttgtcgtcattgtgattaatgtttgactcttttttatgttatgtgaataaaattactcctctaattcaatctgatacaatgatatttgaagggtt 136  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  44953957 tgttgttgtcgtcattgtgattaatgtttgactcttttgtatgttatgtgaataaaatacctcctctaattcaatctgatacaatgatatttgaagggtt 44954056  T
Q  137 gttcgatattgaacatgagttgtcatatctcttaagttag 176  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44954057 gttcgatattgaacatgagttgtcatatctcttaagttag 44954096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 5768098 - 5768058
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5768098 gttacattttaaaattattcatattcttaatcaatcctctt 5768058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 25419609 - 25419569
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25419609 gttacattttaaaattattcatattcttaatcaatcctctt 25419569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 39066904 - 39066864
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39066904 gttacattttaaaattattcatattcttaatcaatcctctt 39066864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 47233856 - 47233816
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47233856 gttacattttaaaattattcatattcttaatcaatcctctt 47233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 5768017 - 5767979
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5768017 ctaagcttatatatatgttgcttatgttatccttttcat 5767979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 25419528 - 25419490
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25419528 ctaagcttatatatatgttgcttatgttatccttttcat 25419490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 480
Target Start/End: Complemental strand, 47233774 - 47233737
Alignment:
Q  443 taagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||| |||||||||||||    
T  47233774 taagcttatatatatgttgcttatattatccttttcat 47233737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 44393851 - 44393889
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  44393851 ctaagctcatatatatgttgcttatgttatccttctcat 44393889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 44393780 - 44393816
Alignment:
Q  396 cattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  44393780 cattttaaaattattcatattcttagtcaatcatctt 44393816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 29455275 - 29455407
Alignment:
Q  247 gtgtctcctaatattgtcagttacacataattacaaatacatg--tgcggctgacatttgtaactcccatttacaacccnnnnnnnntcatttccttaat 344  Q
    |||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||        |||||||||||||    
T  29455275 gtgtctcctaatattgtcagttacacatatatacaaatacatgtatgcggctgacatttgtaactcccatttacaacccaaaaaaaatcatttccttaat 29455374  T
Q  345 ttttgattaataattgacaacacttattatatg 377  Q
    ||||||||||||||||| |||||||||||||||    
T  29455375 ttttgattaataattgataacacttattatatg 29455407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 392 - 480
Target Start/End: Original strand, 43564267 - 43564355
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||    
T  43564267 gttacattttaaaattattcatattcttaatcaatccttttcatttttttctaagcttatatatatgttgcttatgttatccttttcat 43564355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 29455477 - 29455562
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatcctttt 477  Q
    ||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||    
T  29455477 gttacattttaaaattattcatattcttaattaatcctcttcatttttttctaagcttatatatatgttgcttatgttatcctttt 29455562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 43564151 - 43564196
Alignment:
Q  332 tcatttccttaatttttgattaataattgacaacacttattatatg 377  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  43564151 tcattaccttaatttttgattaataattgacaacacttattatatg 43564196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 7574125 - 7574085
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7574125 gttacattttaaaattattcatattcttaatcaatcctctt 7574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 41646742 - 41646702
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41646742 gttacattttaaaattattcatattcttaatcaatcctctt 41646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 7574044 - 7574006
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7574044 ctaagcttatatatatgttgcttatgttatccttttcat 7574006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 16668639 - 16668601
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16668639 ctaagcttatatatatgttgcttatgttatccttttcat 16668601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 16668720 - 16668680
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  16668720 gttacattttaaaattattcatattcttgatcaatcctctt 16668680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 41646660 - 41646622
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  41646660 ctaagcttatatatatgttgcttatgttgtccttttcat 41646622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 918989 - 918901
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||| |||||||||||||||||    
T  918989 gttacattttaaaattattcatattcttaatcaatcctcttcatttttttctaagcttatatatatattgcatatgttatccttttcat 918901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 8150525 - 8150485
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  8150525 gttacattttaaaattattcatattcttaatcagtcctctt 8150485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 10186462 - 10186502
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10186462 gttacattttaaaattgttcatattcttaatcaatcctctt 10186502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 11428176 - 11428136
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  11428176 gttacattttaaaattattcatattcttagtcaatcatctt 11428136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 11428099 - 11428061
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  11428099 ctaagctcatatatatgttgcttatgttatccttctcat 11428061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 20172141 - 20172179
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  20172141 ctaagctcatatatatgttgcttatgttatccttctcat 20172179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 919108 - 919075
Alignment:
Q  340 ttaatttttgattaataattgacaacacttatta 373  Q
    ||||||||||||| ||||||||||||||||||||    
T  919108 ttaatttttgattgataattgacaacacttatta 919075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 20172070 - 20172106
Alignment:
Q  396 cattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  20172070 cattttaaaattattcatattcttagtcaatcatctt 20172106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 3355 - 3395
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3355 gttacattttaaaattattcatattcttaatcaatcctctt 3395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 13433487 - 13433447
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13433487 gttacattttaaaattattcatattcttaatcaatcctctt 13433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 13433406 - 13433368
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13433406 ctaagcttatatatatgttgcttatgttatccttttcat 13433368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 16712143 - 16712103
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  16712143 gttacattttaaaattattcatattcttaatcaatcatctt 16712103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 16712067 - 16712029
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  16712067 ctaagctcatatatatgttgcttatgttatccttttcat 16712029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 36991151 - 36991191
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36991151 gttacattttaaaattattcatattcttaatcaatcctctt 36991191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 36991232 - 36991270
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36991232 ctaagcttatatatatgttgcttatgttatccttttcat 36991270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 21605101 - 21605061
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21605101 gttaaattttaaaattattcatattcttaatcaatcctctt 21605061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 37302022 - 37301986
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcc 428  Q
    |||||||||||||||||||||||||||||||||||||    
T  37302022 gttacattttaaaattattcatattcttaatcaatcc 37301986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 480
Target Start/End: Complemental strand, 37301853 - 37301822
Alignment:
Q  449 tatatatatgttgcttatgttatccttttcat 480  Q
    ||||||||||||||||||||||||||||||||    
T  37301853 tatatatatgttgcttatgttatccttttcat 37301822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 21605013 - 21604984
Alignment:
Q  451 tatatatgttgcttatgttatccttttcat 480  Q
    ||||||||||||||||||||||||||||||    
T  21605013 tatatatgttgcttatgttatccttttcat 21604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 2505035 - 2504995
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2505035 gttacattttaaaattattcatattcttaatcaatcctctt 2504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 46092411 - 46092451
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46092411 gttacattttaaaattattcatattcttaatcaatcctctt 46092451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 46134936 - 46134976
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46134936 gttacattttaaaattattcatattcttaatcaatcctctt 46134976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 53830539 - 53830499
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53830539 gttacattttaaaattattcatattcttaatcaatcctctt 53830499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 2504954 - 2504916
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2504954 ctaagcttatatatatgttgcttatgttatccttttcat 2504916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 34737755 - 34737717
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34737755 ctaagcttatatatatgttgcttatgttatccttttcat 34737717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 46092492 - 46092530
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46092492 ctaagcttatatatatgttgcttatgttatccttttcat 46092530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 46135017 - 46135055
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46135017 ctaagcttatatatatgttgcttatgttatccttttcat 46135055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 53830458 - 53830420
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53830458 ctaagcttatatatatgttgcttatgttatccttttcat 53830420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 20036391 - 20036431
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20036391 gttacattttaaaattaatcatattcttaatcaatcctctt 20036431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 34737833 - 34737793
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  34737833 gttacattttaaaattattcatattcttgatcaatcctctt 34737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 5430821 - 5430861
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  5430821 gttacattttaaaattattcatattcttagtcaatcatctt 5430861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 2500600 - 2500562
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  2500600 ctaagcttacatatatgttgcttatattatccttttcat 2500562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 21803082 - 21803123
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcatctct 484  Q
    |||||||||| ||| ||||||||||||||||||||||||||||    
T  21803082 ctaagcttat-tatgtgttgcttatgttatccttttcatctct 21803123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 2500678 - 2500638
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||  ||||||| ||||||||||||    
T  2500678 gttacattttaaaattatttgtattcttgatcaatcctctt 2500638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 35870451 - 35870491
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35870451 gttacattttaaaattattcatattcttaatcaatcctctt 35870491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 48266372 - 48266412
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48266372 gttacattttaaaattattcatattcttaatcaatcctctt 48266412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 52349915 - 52349953
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52349915 ctaagcttatatatatgttgcttatgttatccttttcat 52349953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 52349834 - 52349874
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  52349834 gttacattttaaaattatttatattcttaatcaatcctctt 52349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 35870532 - 35870570
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  35870532 ctaaacttatatatatgttgcttatgttatccttttcat 35870570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 48266453 - 48266491
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  48266453 ctaagcttatatatatgttgcttatgttatcctcttcat 48266491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 26215499 - 26215537
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  26215499 ctaagctcatatatatgttgcttatgttatccttctcat 26215537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 13786337 - 13786377
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13786337 gttacattttaaaattattcatattcttaatcaatcctctt 13786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 22912562 - 22912522
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22912562 gttacattttaaaattattcatattcttaatcaatcctctt 22912522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 25807806 - 25807766
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25807806 gttacattttaaaattattcatattcttaatcaatcctctt 25807766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 13786418 - 13786456
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13786418 ctaagcttatatatatgttgcttatgttatccttttcat 13786456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 22912484 - 22912446
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  22912484 ctaagcttatatatatgttgcttatgttattcttttcat 22912446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 25807724 - 25807686
Alignment:
Q  442 ctaagcttatatatatgttgcttatgttatccttttcat 480  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  25807724 ctaagcttatatatatgtttcttatgttatccttttcat 25807686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 23726058 - 23726019
Alignment:
Q  392 gttacattttaaaattattcatattcttaatcaatcctctt 432  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23726058 gttacattttaaa-ttattcatattcttaatcaatcctctt 23726019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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