View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10003_1 (Length: 634)

Name: NF10003_1
Description: NF10003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10003_1
NF10003_1
[»] chr1 (12 HSPs)
chr1 (1-622)||(34121122-34121746)
chr1 (60-104)||(41761498-41761542)
chr1 (63-181)||(29994390-29994511)
chr1 (63-104)||(20748-20789)
chr1 (60-104)||(48660019-48660063)
chr1 (63-101)||(26032798-26032836)
chr1 (62-104)||(46447464-46447506)
chr1 (63-104)||(28455874-28455915)
chr1 (63-104)||(32007074-32007115)
chr1 (63-104)||(41808202-41808243)
chr1 (59-104)||(45294654-45294699)
chr1 (68-104)||(29587257-29587293)
[»] chr6 (5 HSPs)
chr6 (59-104)||(14939144-14939189)
chr6 (61-104)||(33621492-33621535)
chr6 (62-104)||(2959148-2959190)
chr6 (63-104)||(21000692-21000733)
chr6 (63-104)||(33704216-33704257)
[»] chr4 (10 HSPs)
chr4 (60-104)||(28798475-28798519)
chr4 (61-104)||(53457822-53457865)
chr4 (62-104)||(1173950-1173992)
chr4 (62-104)||(11277981-11278023)
chr4 (62-104)||(18257328-18257370)
chr4 (63-104)||(2864835-2864876)
chr4 (63-104)||(19849590-19849631)
chr4 (63-104)||(26424944-26424985)
chr4 (63-104)||(34739280-34739321)
chr4 (63-104)||(54768519-54768560)
[»] chr8 (15 HSPs)
chr8 (62-104)||(41849318-41849360)
chr8 (62-103)||(45264727-45264768)
chr8 (61-104)||(28817254-28817297)
chr8 (62-104)||(32333113-32333155)
chr8 (62-104)||(42192726-42192768)
chr8 (60-106)||(42364786-42364832)
chr8 (63-104)||(70610-70651)
chr8 (63-104)||(6602605-6602646)
chr8 (63-104)||(6678058-6678099)
chr8 (63-104)||(7792661-7792702)
chr8 (63-104)||(12534805-12534846)
chr8 (147-183)||(5385425-5385461)
chr8 (69-101)||(5700739-5700771)
chr8 (60-104)||(6099569-6099613)
chr8 (68-104)||(39303314-39303350)
[»] chr2 (10 HSPs)
chr2 (62-104)||(19537306-19537348)
chr2 (62-104)||(10639693-10639735)
chr2 (62-104)||(11459714-11459756)
chr2 (63-104)||(23839859-23839900)
chr2 (63-104)||(26605624-26605665)
chr2 (63-104)||(33083641-33083682)
chr2 (63-104)||(34234530-34234571)
chr2 (63-104)||(42578180-42578221)
chr2 (68-104)||(11816638-11816674)
chr2 (60-104)||(34460366-34460410)
[»] chr7 (8 HSPs)
chr7 (68-104)||(43753841-43753877)
chr7 (61-104)||(31770619-31770662)
chr7 (59-104)||(2146632-2146677)
chr7 (63-104)||(40058238-40058279)
chr7 (68-104)||(8439083-8439119)
chr7 (60-104)||(23358182-23358226)
chr7 (60-104)||(25112334-25112378)
chr7 (68-104)||(47250338-47250374)
[»] chr5 (8 HSPs)
chr5 (69-104)||(3386987-3387022)
chr5 (63-101)||(2786271-2786309)
chr5 (62-108)||(27721430-27721476)
chr5 (62-104)||(35317784-35317826)
chr5 (63-104)||(13203957-13203998)
chr5 (60-105)||(35545930-35545975)
chr5 (60-104)||(1191627-1191671)
chr5 (68-104)||(4825026-4825062)
[»] chr3 (9 HSPs)
chr3 (61-104)||(7824541-7824584)
chr3 (61-104)||(29689569-29689612)
chr3 (63-104)||(4601425-4601466)
chr3 (63-104)||(29750621-29750662)
chr3 (61-106)||(33334606-33334651)
chr3 (63-104)||(42392892-42392933)
chr3 (63-104)||(51666012-51666053)
chr3 (63-104)||(54151768-54151809)
chr3 (63-104)||(54158266-54158307)
[»] scaffold1348 (1 HSPs)
scaffold1348 (63-104)||(949-990)
[»] scaffold0044 (1 HSPs)
scaffold0044 (63-104)||(10060-10101)
[»] scaffold0032 (1 HSPs)
scaffold0032 (63-104)||(56481-56522)
[»] scaffold0067 (1 HSPs)
scaffold0067 (68-104)||(34823-34859)


Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 34121746 - 34121122
Alignment:
Q  1 tgctcatataattttagtcaaattatttacataatttgattaattaaacttatactagatttgtcttgaagtcctaattcaactggcaaatgccgaaatt 100  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  34121746 tgctcgtataattttagtcaaattatttacgtaatttgataaattaaacttatattagatttgtcttgaagtcctaattcaactggcaaatgtcgaaatt 34121647  T
Q  101 gcaaagtcaaatatcatgatttggattcgaactcagata-tcacaattgtgtgagtttaatttcaatgatttacaacttcatttnnnnnnnnnncttata 199  Q
    ||||||||||||||||| ||  | ||||||||| |||   ||| | ||||||||||||||||||||||||||||||||||||||          ||||||    
T  34121646 gcaaagtcaaatatcataatccgaattcgaactaagaacctcagagttgtgtgagtttaatttcaatgatttacaacttcatttaaaaaaaaa-cttata 34121548  T
Q  200 ctaaatttatgcgatgcacaccagctaatatgcattaattgggtttgttagtgtgtgagagtgaaaagtatacaagtgcaatcacttgaaaccacacaag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34121547 ctaaatttatgcgatgcacaccagctaatatgcattaattgggtttgttagtgtgtgagagtgaaaagtatacaagtgcaatcacttgaaaccacacaag 34121448  T
Q  300 gccaatagattattgagctcaaattatcaaaactcaactctataatttaatggacccacatttgcaattgcatgttggggaaaaagatatgaatgtgaca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34121447 gccaatagattattgagctcaaattatcaaaactcaactctataatttaatggacccacatttgcaattgcatgttggggaaaaagatatgaatgtgaca 34121348  T
Q  400 nnnnnnnnnnnnnnaatcatctatatat---gaaggtgacatgaaaacttgaaggcaccataaacaacacctgctacactaccaattattttggtcccta 496  Q
                  ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34121347 tttttattttttttaatcatctatatatgaagaaggtgacatgaaaacttgaaggcaccataaacaacacctgctacactaccaattattttggtcccta 34121248  T
Q  497 acatatgccataaaatattcctagcttatttatactcttgaagttaatccctatggttgggtttgattagtaaatatgcacacaaagattatccaaatag 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34121247 acatatgccataaaatattcctagcttatttatactcttgaagttaatccctatggttgggtttgattagtaaatatgcacacaaagattatccaaatag 34121148  T
Q  597 aatagttgatcgtcacacgtgtgtag 622  Q
    ||||||||||||||||||||||||||    
T  34121147 aatagttgatcgtcacacgtgtgtag 34121122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 41761542 - 41761498
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  41761542 tttgtctagaagtcctagttcaactggcaaatgccgaaattgcaa 41761498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 29994511 - 29994390
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaaagtcaaatatcatgatttggattcgaactc-agatatcacaat--tgtgtgagtttaa 159  Q
    |||| |||||||||  |||||||||||||||||||||||||| | || |  |||||||  || ||||||| | |||  |||||||  |||||||||||||    
T  29994511 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggccagacgtcatgatccgggttcgaacccgagacctcacaattgtgtgtgagtttaa 29994412  T
Q  160 tttcaatgatttacaacttcat 181  Q
    ||||| || ||||| |||||||    
T  29994411 tttcagtggtttaccacttcat 29994390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 20748 - 20789
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  20748 gtctagaagtcctaactcaactggcaaatgccgaaattgcaa 20789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 48660019 - 48660063
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||    
T  48660019 tttgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 48660063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 26032798 - 26032836
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattg 101  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  26032798 gtctagaagtcctaattcaactgacaaatgccgaaattg 26032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 46447506 - 46447464
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||    
T  46447506 tgtctagaagttctagttcaactggcaaatgccgaaattgcaa 46447464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 28455874 - 28455915
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  28455874 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 28455915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 32007074 - 32007115
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  32007074 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 32007115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 41808202 - 41808243
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  41808202 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 41808243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 45294654 - 45294699
Alignment:
Q  59 atttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||    
T  45294654 atttgtctagaagtcctagctcaactagcaaatgccgaaattgcaa 45294699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 29587257 - 29587293
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||||  ||||||||||||||||||||||||||    
T  29587257 gaagtcctagctcaactggcaaatgccgaaattgcaa 29587293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 14939144 - 14939189
Alignment:
Q  59 atttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||    
T  14939144 atttgtctagaagtcctaactcaactggcaaatgccgaaattgcaa 14939189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 33621492 - 33621535
Alignment:
Q  61 ttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  33621492 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 33621535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 2959148 - 2959190
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||| |||||| |||||||||||||||||||    
T  2959148 tgtctagaagtcctaactcaactagcaaatgccgaaattgcaa 2959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 21000692 - 21000733
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  21000692 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 21000733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 33704216 - 33704257
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  33704216 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 33704257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 28798519 - 28798475
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  28798519 tttgtctagaagtcctagttcaactggcaaatgccgaaattgcaa 28798475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 53457822 - 53457865
Alignment:
Q  61 ttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  53457822 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 53457865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 1173950 - 1173992
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  1173950 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 1173992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 11277981 - 11278023
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  11277981 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 11278023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 18257328 - 18257370
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  18257328 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 18257370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 2864876 - 2864835
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||| |||||||||||||||| |||||||||    
T  2864876 gtctagaagtcctaactcaactggcaaatgcctaaattgcaa 2864835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 19849631 - 19849590
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  19849631 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 19849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 26424985 - 26424944
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  26424985 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 26424944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 34739280 - 34739321
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  34739280 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 34739321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 54768560 - 54768519
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  54768560 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 54768519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 41849360 - 41849318
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  41849360 tgtctggaagtcttaattcaactggcaaatgccgaaattgcaa 41849318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 45264768 - 45264727
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgca 103  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  45264768 tgtctagaagtcctaactcaactggcaaatgccgaaattgca 45264727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 28817254 - 28817297
Alignment:
Q  61 ttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  28817254 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 28817297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 32333113 - 32333155
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  32333113 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 32333155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 42192768 - 42192726
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  42192768 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 42192726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 42364832 - 42364786
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaaag 106  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||||||    
T  42364832 tttgtctagaagtcctatctcaactgccaaatgccgaaattgcaaag 42364786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 70651 - 70610
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  70651 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 70610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 6602646 - 6602605
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  6602646 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 6602605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 6678099 - 6678058
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  6678099 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 6678058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 7792661 - 7792702
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  7792661 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 7792702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 12534846 - 12534805
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  12534846 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 12534805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 5385425 - 5385461
Alignment:
Q  147 tgtgtgagtttaatttcaatgatttacaacttcattt 183  Q
    |||||||||||||||||| |||||||| |||||||||    
T  5385425 tgtgtgagtttaatttcagtgatttaccacttcattt 5385461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 5700771 - 5700739
Alignment:
Q  69 aagtcctaattcaactggcaaatgccgaaattg 101  Q
    ||||||||| |||||||||||||||||||||||    
T  5700771 aagtcctaactcaactggcaaatgccgaaattg 5700739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 6099569 - 6099613
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| ||||||||| ||||||| ||||||| |||||||||||    
T  6099569 tttgtctagaagtcctagttcaacttgcaaatgtcgaaattgcaa 6099613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 39303314 - 39303350
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||||  ||||||||||||||||||||||||||    
T  39303314 gaagtcctagctcaactggcaaatgccgaaattgcaa 39303350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 19537306 - 19537348
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  19537306 tgtctagaagtcctagttcaactggcaaatgccgaaattgcaa 19537348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 10639735 - 10639693
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  10639735 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 10639693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 11459714 - 11459756
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  11459714 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 11459756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 23839859 - 23839900
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||| |||||||||||||||| |||||||||    
T  23839859 gtctagaagtcctaactcaactggcaaatgccaaaattgcaa 23839900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 26605624 - 26605665
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  26605624 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 26605665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 33083682 - 33083641
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  33083682 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 33083641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 34234530 - 34234571
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  34234530 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 34234571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 42578180 - 42578221
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  42578180 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 42578221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 11816674 - 11816638
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||||  ||||||||||||||||||||||||||    
T  11816674 gaagtcctagctcaactggcaaatgccgaaattgcaa 11816638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 34460366 - 34460410
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||||    
T  34460366 tttgtctagaagtcctagctcaactgacaaatgccgaaattgcaa 34460410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 43753877 - 43753841
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||||| |||||||||||||||||||||||||||    
T  43753877 gaagtcctagttcaactggcaaatgccgaaattgcaa 43753841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 31770662 - 31770619
Alignment:
Q  61 ttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  31770662 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 31770619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 2146632 - 2146677
Alignment:
Q  59 atttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||| |||||||||  |||||||| |||||||||||||||||    
T  2146632 atttgtctagaagtcctagctcaactggaaaatgccgaaattgcaa 2146677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 40058238 - 40058279
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||| |||||||||||||||| |||||||||    
T  40058238 gtctagaagtcctaactcaactggcaaatgccaaaattgcaa 40058279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 8439083 - 8439119
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  8439083 gaagtcctagttcaactggcaaatgccaaaattgcaa 8439119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 23358182 - 23358226
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||||    
T  23358182 tttgtctagaagtcctagctcaactggcaaataccgaaattgcaa 23358226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 25112378 - 25112334
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||||    
T  25112378 tttgtctagaagtcctagctcaactggcaaataccgaaattgcaa 25112334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 47250374 - 47250338
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||||  ||||||||||||||||||||||||||    
T  47250374 gaagtcctagctcaactggcaaatgccgaaattgcaa 47250338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 3387022 - 3386987
Alignment:
Q  69 aagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||| |||||||||||||||||||||||||||    
T  3387022 aagtcctagttcaactggcaaatgccgaaattgcaa 3386987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 2786271 - 2786309
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattg 101  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  2786271 gtctagaagtcctaattcaattggcaaatgccgaaattg 2786309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 27721430 - 27721476
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaaagtc 108  Q
    ||||| |||||||||  |||||||| |||||||||||||||||||||    
T  27721430 tgtctagaagtcctagctcaactggaaaatgccgaaattgcaaagtc 27721476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 35317826 - 35317784
Alignment:
Q  62 tgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  35317826 tgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 35317784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 13203957 - 13203998
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  13203957 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 13203998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 35545930 - 35545975
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaaa 105  Q
    ||||||| ||||| |||| ||||||| |||||||||||||||||||    
T  35545930 tttgtctagaagttctaactcaactgacaaatgccgaaattgcaaa 35545975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 1191671 - 1191627
Alignment:
Q  60 tttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    ||||||| |||||||||  |||||||||||||| |||||||||||    
T  1191671 tttgtctagaagtcctagctcaactggcaaatgacgaaattgcaa 1191627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 4825062 - 4825026
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||||  ||||||||||||||||||||||||||    
T  4825062 gaagtcctagctcaactggcaaatgccgaaattgcaa 4825026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 7824584 - 7824541
Alignment:
Q  61 ttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  7824584 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 7824541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 29689612 - 29689569
Alignment:
Q  61 ttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  29689612 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaa 29689569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 4601425 - 4601466
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  4601425 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 4601466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 29750621 - 29750662
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| ||||| |||| ||||||||||||||||||||||||||    
T  29750621 gtctagaagtactaactcaactggcaaatgccgaaattgcaa 29750662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 33334606 - 33334651
Alignment:
Q  61 ttgtcttgaagtcctaattcaactggcaaatgccgaaattgcaaag 106  Q
    |||||| |||||||||  |||||| |||||||||||||||||||||    
T  33334606 ttgtctagaagtcctagctcaacttgcaaatgccgaaattgcaaag 33334651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 42392933 - 42392892
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  42392933 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 42392892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 51666053 - 51666012
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  51666053 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 51666012  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 54151809 - 54151768
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  54151809 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 54151768  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 54158266 - 54158307
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  54158266 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 54158307  T

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Target: scaffold1348 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 990 - 949
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  990 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 949  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 10101 - 10060
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  10101 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 10060  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 56481 - 56522
Alignment:
Q  63 gtcttgaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  56481 gtctagaagtcctagctcaactggcaaatgccgaaattgcaa 56522  T

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Target: scaffold0067 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 34823 - 34859
Alignment:
Q  68 gaagtcctaattcaactggcaaatgccgaaattgcaa 104  Q
    |||||||||  ||||||||||||||||||||||||||    
T  34823 gaagtcctagctcaactggcaaatgccgaaattgcaa 34859  T

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