View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10003_3 (Length: 432)
Name: NF10003_3
Description: NF10003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10003_3 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 50804717 - 50805099
Alignment:
| Q |
21 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804717 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50804816 |
T |
|
| Q |
121 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
220 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50804817 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50804916 |
T |
|
| Q |
221 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804917 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50805016 |
T |
|
| Q |
321 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805017 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
50805099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Complemental strand, 50871160 - 50870778
Alignment:
| Q |
21 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871160 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50871061 |
T |
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| Q |
121 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
220 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50871060 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50870961 |
T |
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| Q |
221 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870960 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50870861 |
T |
|
| Q |
321 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870860 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
50870778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 25 - 403
Target Start/End: Complemental strand, 19057467 - 19057089
Alignment:
| Q |
25 |
catcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagagacta |
124 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
19057467 |
catcaggacatcctacaatcacacataacatacattagtcttggcattgtggtcctacctaactccggggatttgtttctaccattgtgagcagagaata |
19057368 |
T |
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| Q |
125 |
cacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
224 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057367 |
cacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
19057268 |
T |
|
| Q |
225 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057267 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
19057168 |
T |
|
| Q |
325 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19057167 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagatatatg |
19057089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
182 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
272 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
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| Q |
273 |
cgtaggtagaaccatcttg |
291 |
Q |
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| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 11181 - 11241
Alignment:
| Q |
332 |
aaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtt |
392 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
11181 |
aaaaaaaaaacaacagatgaagaagttatttgctaaaggagtatttaaatataaaattgtt |
11241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 40705780 - 40705718
Alignment:
| Q |
327 |
tagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtt |
392 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
40705780 |
tagacaaaaaacaaacaa---atgaataagttatttgctaaaggagtatttaaatataaaactgtt |
40705718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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