View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10003_4 (Length: 392)
Name: NF10003_4
Description: NF10003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10003_4 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 17075396 - 17075755
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
113 |
Q |
| |
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|||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||| |
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| T |
17075396 |
catcataatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcgga |
17075495 |
T |
|
| Q |
114 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
213 |
Q |
| |
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|||||||||| ||||||||||| || ||||| ||||| |||| |||||||||||| |||| |||||||| || || | ||||| ||||| |||||||| |
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| T |
17075496 |
agaaagtgaacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatc |
17075595 |
T |
|
| Q |
214 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
313 |
Q |
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|
||||| ||||||||||||||| ||||| || |||||||||||||| | | |||||||||| ||| ||| ||||| ||||| || |||||||| |||||| |
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| T |
17075596 |
taaattgagaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaac |
17075695 |
T |
|
| Q |
314 |
aatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtgattgatgatgtc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
17075696 |
aatgattgggttaattgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 11053470 - 11053702
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagagg |
112 |
Q |
| |
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||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| || || | | | || || |
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| T |
11053470 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcgg |
11053568 |
T |
|
| Q |
113 |
aagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaat |
212 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||| || || |||| || || ||||||| |
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| T |
11053569 |
aagaaagtgaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaat |
11053668 |
T |
|
| Q |
213 |
ctaaatcgagaaaattacaaggttcggatcgtct |
246 |
Q |
| |
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|||||||||| |||||||||||||| || ||||| |
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| T |
11053669 |
ctaaatcgaggaaattacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
242 |
cgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgc |
341 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
342 |
atgggaatgagaaggttgtgattgatgatgt |
372 |
Q |
| |
|
||| ||||||||| || ||| |||||||||| |
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| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 17684263 - 17683905
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttat--aaaga- |
110 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||| ||||||||||||| | |||||||||||||||| || |||| | | ||| || | ||| | |
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|
| T |
17684263 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcctattt-----tccaatccgatatttgtgcaaacaa |
17684169 |
T |
|
| Q |
111 |
--ggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacatttta |
208 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| |||||| |||||||| ||| || ||||||| || || ||| |
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|
| T |
17684168 |
acggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatctta |
17684069 |
T |
|
| Q |
209 |
aaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcgg |
308 |
Q |
| |
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|||||||||||||| |||||||||||||| || ||||||||||||| ||| | || |||||| ||| ||||||| || || |||||||||||| |||||| |
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| T |
17684068 |
aaatctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcgg |
17683969 |
T |
|
| Q |
309 |
ttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtgattgatgatgt |
372 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| || | | |||||||||| |
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|
| T |
17683968 |
ttaataatgattgggttaattgggtggcagtgcatgggaatgagaaagtagcggttgatgatgt |
17683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 36160065 - 36159902
Alignment:
| Q |
194 |
gttttgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagtt |
293 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||| ||||||| |||| |
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| T |
36160065 |
gttttgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagtt |
36159966 |
T |
|
| Q |
294 |
cctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggt |
357 |
Q |
| |
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| || || | || |||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
36159965 |
cttcttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 107 - 370
Target Start/End: Original strand, 10559739 - 10560002
Alignment:
| Q |
107 |
aagaggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattt |
206 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| |||||||||| ||||||| || | |||| |||||||| | || ||||||| ||||| | |
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|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
207 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||||||||| ||| ||||||||| ||||| || ||||| || |
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|
| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
307 |
ggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtgattgatgat |
370 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 10558419 - 10558490
Alignment:
| Q |
13 |
acatcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgc |
84 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
10558419 |
acatcatcatggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 26741893 - 26741535
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
113 |
Q |
| |
|
||||||||||| | |||||||||||||| ||| | || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||| |
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|
| T |
26741893 |
catcatcatggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcgga |
26741794 |
T |
|
| Q |
114 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
213 |
Q |
| |
|
|||||||||||| || || ||| | |||| |||||||||| ||||||| ||| ||||| ||||||| || || | ||||| ||||| |||||||| |
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|
| T |
26741793 |
agaaagtgaatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatc |
26741694 |
T |
|
| Q |
214 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
313 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||| || |||| |||||||||| ||| ||| ||||| ||||| || ||||| || |||||| |
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|
| T |
26741693 |
taagtcgagaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaac |
26741594 |
T |
|
| Q |
314 |
aatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtgattgatgatgt |
372 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
26741593 |
aacgattgggttaattgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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