View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10003_6 (Length: 359)
Name: NF10003_6
Description: NF10003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10003_6 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 334
Target Start/End: Original strand, 30665723 - 30666027
Alignment:
| Q |
30 |
cagacaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccgg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30665723 |
cagacaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcgttaccgg |
30665822 |
T |
|
| Q |
130 |
tgacaatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30665823 |
tgacaatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcac |
30665922 |
T |
|
| Q |
230 |
catctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgatg |
329 |
Q |
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| T |
30665923 |
catctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgata |
30666022 |
T |
|
| Q |
330 |
atgtc |
334 |
Q |
| |
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||||| |
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| T |
30666023 |
atgtc |
30666027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 33 - 322
Target Start/End: Original strand, 34435088 - 34435376
Alignment:
| Q |
33 |
acaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtga |
132 |
Q |
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| T |
34435088 |
acaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaa |
34435187 |
T |
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| Q |
133 |
caatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccat |
232 |
Q |
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||||||| |||||||| || || ||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| |
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| T |
34435188 |
caatgataggcacacgtgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccat |
34435287 |
T |
|
| Q |
233 |
ctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttccctt |
322 |
Q |
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|| ||||| || ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| |
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| T |
34435288 |
ttgattgttcactgtgtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacat-tttccctt |
34435376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 54 - 334
Target Start/End: Original strand, 6853480 - 6853760
Alignment:
| Q |
54 |
gtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtgacaatgatgggcacacgagcgt |
153 |
Q |
| |
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||||| |||||||||||||| |||||||| |||||||| || | ||||||||| | || ||||| ||||| || ||||| ||||| || || || || | |
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| T |
6853480 |
gtaggtgcccagtagaatttttccatacgtccatcacgaattaaaggagcatacaacgtagagaagtcattgccagtgacgatgatagggacgcgggcat |
6853579 |
T |
|
| Q |
154 |
tatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattg |
253 |
Q |
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| ||||| |||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
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| T |
6853580 |
tctcttctttgttgtacataccgggaagttgaacattggtagggttgtcagcaatgttcatgagggttgcatttaccatctggttgttgactgtgtattg |
6853679 |
T |
|
| Q |
254 |
tgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgatgatgtc |
334 |
Q |
| |
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|| || |||||||| | ||| ||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||| ||||| |
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| T |
6853680 |
agtagtgccacccattctaccagctcctgcatcaagatcattgatgaagagacagcacatctttccttttctgataatgtc |
6853760 |
T |
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