View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10004_1 (Length: 528)

Name: NF10004_1
Description: NF10004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10004_1
NF10004_1
[»] chr1 (7 HSPs)
chr1 (31-232)||(28241569-28241770)
chr1 (224-256)||(43954365-43954397)
chr1 (224-257)||(40920610-40920643)
chr1 (224-256)||(6025774-6025806)
chr1 (228-256)||(6299478-6299506)
chr1 (224-256)||(8342962-8342994)
chr1 (224-256)||(30834058-30834090)
[»] scaffold0373 (1 HSPs)
scaffold0373 (224-256)||(2382-2414)
[»] chr4 (4 HSPs)
chr4 (224-256)||(6843784-6843816)
chr4 (224-256)||(7544604-7544636)
chr4 (224-256)||(41192230-41192262)
chr4 (224-256)||(50662557-50662589)
[»] chr2 (3 HSPs)
chr2 (224-256)||(12026086-12026118)
chr2 (224-256)||(32402669-32402701)
chr2 (224-256)||(42582519-42582551)
[»] chr8 (4 HSPs)
chr8 (224-275)||(37826437-37826488)
chr8 (224-256)||(10079988-10080020)
chr8 (224-256)||(38483050-38483082)
chr8 (224-256)||(39388952-39388984)
[»] chr3 (2 HSPs)
chr3 (224-275)||(11284138-11284189)
chr3 (224-253)||(46140579-46140608)
[»] chr7 (3 HSPs)
chr7 (224-256)||(29653627-29653659)
chr7 (224-256)||(30200045-30200077)
chr7 (224-256)||(40139029-40139061)
[»] chr6 (1 HSPs)
chr6 (224-256)||(35199703-35199735)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 28241569 - 28241770
Alignment:
Q  31 gtatgatcggtatgctagaagttaaagataagagcagatacatttgtaagaattgggaagaatacatgacattatagaccaaaatttgaacatgaaaaat 130  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  28241569 gtatgatcggtatgctagaagttaaagataagagcatatacatttgtaagaattgggaagaatacgtgacgttatagaccaaaattagaacatgaaaaat 28241668  T
Q  131 caatgttacataccaatgactaagtgtgggatactaagtggtgtcggct-aatagatcaaacgacatcataatattttatcatgaacaatattgtatttc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  28241669 caatgttacataccaatgactaagtgtgggatactaagtggtgtcggctaaatagatcaaacgacat-atattattttatcatgaacaatattgtatttc 28241767  T
Q  230 tat 232  Q
    |||    
T  28241768 tat 28241770  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 43954397 - 43954365
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  43954397 tatttctatcaaactcattaatctctagatctt 43954365  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 40920610 - 40920643
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctta 257  Q
    |||||||||| |||||||||||||||||||||||    
T  40920610 tatttctatccaactcattaatctctagatctta 40920643  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 6025806 - 6025774
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  6025806 tatttctatccaactcattaatctctagatctt 6025774  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 6299478 - 6299506
Alignment:
Q  228 tctatcaaactcattaatctctagatctt 256  Q
    |||||||||||||||||||||||||||||    
T  6299478 tctatcaaactcattaatctctagatctt 6299506  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 8342962 - 8342994
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  8342962 tatttctatccaactcattaatctctagatctt 8342994  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 30834058 - 30834090
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  30834058 tatttctatccaactcattaatctctagatctt 30834090  T

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Target: scaffold0373 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 2382 - 2414
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  2382 tatttctatcaaactcattaatctctagatctt 2414  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 6843816 - 6843784
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  6843816 tatttctatcaaactcattaatctctagatctt 6843784  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 7544604 - 7544636
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||| ||||||||||||||||||||||||||    
T  7544604 tatttcgatcaaactcattaatctctagatctt 7544636  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 41192262 - 41192230
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  41192262 tatttctatccaactcattaatctctagatctt 41192230  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 50662589 - 50662557
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||| ||||||||||||||||||||||||||    
T  50662589 tatttcgatcaaactcattaatctctagatctt 50662557  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 12026086 - 12026118
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  12026086 tatttctatcaaactcattaatctctagatctt 12026118  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 32402701 - 32402669
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  32402701 tatttctatccaactcattaatctctagatctt 32402669  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 42582519 - 42582551
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    ||||||||||||||||||||||||||| |||||    
T  42582519 tatttctatcaaactcattaatctctacatctt 42582551  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 37826488 - 37826437
Alignment:
Q  224 tatttctatcaaactcattaatctctagatcttaataatttatcttatagtt 275  Q
    |||||||||| |||||  ||||||||||||||||||| ||| ||||||||||    
T  37826488 tatttctatccaactcgctaatctctagatcttaatagtttctcttatagtt 37826437  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 10079988 - 10080020
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  10079988 tatttctatccaactcattaatctctagatctt 10080020  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 38483050 - 38483082
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  38483050 tatttctatccaactcattaatctctagatctt 38483082  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 39388984 - 39388952
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  39388984 tatttctatccaactcattaatctctagatctt 39388952  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 11284189 - 11284138
Alignment:
Q  224 tatttctatcaaactcattaatctctagatcttaataatttatcttatagtt 275  Q
    ||||| |||| |||||||||||||||| ||||||||| ||| ||||||||||    
T  11284189 tatttatatccaactcattaatctctacatcttaatagtttctcttatagtt 11284138  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 46140608 - 46140579
Alignment:
Q  224 tatttctatcaaactcattaatctctagat 253  Q
    ||||||||||||||||||||||||||||||    
T  46140608 tatttctatcaaactcattaatctctagat 46140579  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 29653627 - 29653659
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  29653627 tatttctatctaactcattaatctctagatctt 29653659  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 30200045 - 30200077
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    ||||| |||||||||||||||||||||||||||    
T  30200045 tatttatatcaaactcattaatctctagatctt 30200077  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 40139029 - 40139061
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||||||| ||||||||||||||||||    
T  40139029 tatttctatcaaacgcattaatctctagatctt 40139061  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 35199703 - 35199735
Alignment:
Q  224 tatttctatcaaactcattaatctctagatctt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  35199703 tatttctatctaactcattaatctctagatctt 35199735  T

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