View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10004_3 (Length: 375)
Name: NF10004_3
Description: NF10004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10004_3 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 49953989 - 49953855
Alignment:
| Q |
1 |
tataaatatacactgaaacatatataaaaacaacataaaacttgtttccacaggaaacaaaattaaacactgtcatattttgtcatccccgtggtatatt |
100 |
Q |
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| T |
49953989 |
tataaatatacactgaaacatatataaaaacaacataaaacttgtttccacaggaaacaaaattaaacactgtcatattttgtcatccccgtggtatatt |
49953890 |
T |
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| Q |
101 |
cttttgaccatgaaacagtgctcaataatcacatg |
135 |
Q |
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| T |
49953889 |
cttttgaccattaaacagtgctcaataatcacatg |
49953855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 232 - 363
Target Start/End: Complemental strand, 49953761 - 49953626
Alignment:
| Q |
232 |
aaatgtagtgtcatactggaaaaataaataaaaagggcagtgagtaa----atatatgtttgatgatatatgggaaattgggaatgttgattaagggaaa |
327 |
Q |
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| T |
49953761 |
aaatgtagtgtcatactggaaaaataaataaaaagggcagtgagtaattaaatatatgtttgatgatatatgggaaattgggaatgttgattaagggaaa |
49953662 |
T |
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| Q |
328 |
gtagtggtctcatcgaagttgcttaaataggatatt |
363 |
Q |
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| T |
49953661 |
gtagtggtctcatcgaagttgcttaaattggatatt |
49953626 |
T |
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