View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10004_4 (Length: 357)

Name: NF10004_4
Description: NF10004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10004_4
NF10004_4
[»] chr5 (2 HSPs)
chr5 (1-336)||(22016480-22016815)
chr5 (300-334)||(22016830-22016864)


Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 22016480 - 22016815
Alignment:
Q  1 tagtgctataataattttgccattctgcacatttgtgtttattaatcaaggagtgtaacatagccactttgctacacttctaactttggatttgctataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016480 tagtgctataataattttgccattctgcacatttgtgtttattaatcaaggagtgtaacatagccactttgctacacttctaactttggatttgctataa 22016579  T
Q  101 ggttacttttgtaagtgctgctttgtgatgacttagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacgctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016580 ggttacttttgtaagtgctgctttgtgatgacttagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacgctat 22016679  T
Q  201 ttaccgaagcctcctcagatgaattgtctggatgaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgtaatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016680 ttaccgaagcctcctcagatgaattgtctggatgaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgtaatg 22016779  T
Q  301 aagggacagataataatgaaaataatgctgatgatg 336  Q
    |||||| |||||||||||||||||||||||||||||    
T  22016780 aagggaaagataataatgaaaataatgctgatgatg 22016815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 22016830 - 22016864
Alignment:
Q  300 gaagggacagataataatgaaaataatgctgatga 334  Q
    |||||||||||||||||||||||||||||||||||    
T  22016830 gaagggacagataataatgaaaataatgctgatga 22016864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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