View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10004_5 (Length: 339)
Name: NF10004_5
Description: NF10004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10004_5 |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 39954595 - 39954925
Alignment:
| Q |
9 |
gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954595 |
gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat |
39954694 |
T |
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| Q |
109 |
tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacagaactaagcattcaaccagatctaagactactaaatttatattaacca |
208 |
Q |
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| T |
39954695 |
tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacaggactaagcattcaaccagatctaagactactaaatttatattaacca |
39954794 |
T |
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| Q |
209 |
gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatcca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954795 |
gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatcca |
39954894 |
T |
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| Q |
309 |
tggcggtaacagttttcctcctagcatgctc |
339 |
Q |
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| T |
39954895 |
tggcggtaacagttttcctcctagcatgctc |
39954925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 10575576 - 10575489
Alignment:
| Q |
252 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctc |
339 |
Q |
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| T |
10575576 |
aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctc |
10575489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 24982235 - 24982148
Alignment:
| Q |
252 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctc |
339 |
Q |
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| T |
24982235 |
aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctc |
24982148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 31825550 - 31825637
Alignment:
| Q |
252 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctc |
339 |
Q |
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| T |
31825550 |
aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctc |
31825637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 24919879 - 24919966
Alignment:
| Q |
252 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctc |
339 |
Q |
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| T |
24919879 |
aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctc |
24919966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 25085219 - 25085140
Alignment:
| Q |
260 |
aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctc |
339 |
Q |
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| T |
25085219 |
aaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc |
25085140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 21584613 - 21584677
Alignment:
| Q |
275 |
cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctc |
339 |
Q |
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| T |
21584613 |
cttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctc |
21584677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 53328904 - 53328834
Alignment:
| Q |
251 |
taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagt |
321 |
Q |
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| T |
53328904 |
taacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagt |
53328834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 26358540 - 26358613
Alignment:
| Q |
251 |
taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagtttt |
324 |
Q |
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| T |
26358540 |
taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgtttt |
26358613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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