View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10004_6 (Length: 333)
Name: NF10004_6
Description: NF10004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10004_6 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 49041745 - 49042043
Alignment:
| Q |
20 |
gtgctcaagacgacagcgtaggaatttggatttgctttcaaaagatctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041745 |
gtgctcaagacgacagcgtaggaatttggatttgctttcaaaagatctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagat |
49041844 |
T |
|
| Q |
120 |
tatagcttttaatgtttgttcttagcttgtaatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaagaatgtc |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041845 |
tatagcttttaatgtttgttctaagcttgtaatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaagaatgtc |
49041944 |
T |
|
| Q |
220 |
aatgtctcttggattaacacatgttttagcaaaaagtgcgtctaatgctccaaacattacagcttcggcttctaaacgcgcttctttcatgcatagatt |
318 |
Q |
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| T |
49041945 |
aatgtctcttggattaacacctgttttagcaaaaagtgcgtctaatgatccaaacattacagattcggcttctaaacgcgcttctttcatgcatagatt |
49042043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 26464026 - 26463824
Alignment:
| Q |
41 |
gaatttggatttgctttcaaaagatctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttc |
140 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26464026 |
gaatttggacttgctttcaaaagat-tttagcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttc |
26463928 |
T |
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| Q |
141 |
ttagcttgtaatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaagaatgtcaatgtctcttggattaacaca |
240 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
26463927 |
ttagcttgtcatggttcacaatcattgcagaaagggaaggagttgggttatacaaactacaatttacaacaaggatgtcaatgtctcttgaattaacaca |
26463828 |
T |
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| Q |
241 |
tgtt |
244 |
Q |
| |
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|||| |
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| T |
26463827 |
tgtt |
26463824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 31197769 - 31197650
Alignment:
| Q |
41 |
gaatttggatttgctttcaaaagatctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttc |
140 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31197769 |
gaatttggacttgctttcaaaagat-tttagcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttc |
31197671 |
T |
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| Q |
141 |
ttagcttgtaatggttcacaa |
161 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
31197670 |
ttagcttgtaatgattcacaa |
31197650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 34052114 - 34051972
Alignment:
| Q |
68 |
ttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttcttagcttgtaatggttcacaatcattg |
167 |
Q |
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|||||||| ||||| || ||||| |||||||||||||||||||| || |||||||| |||| || || ||||| ||| ||||| ||||||||||| | |
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| T |
34052114 |
ttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatag |
34052015 |
T |
|
| Q |
168 |
cagaaagtgaaggagttgggttaaacaaactacaatttacaac |
210 |
Q |
| |
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||||||| ||||| || || ||||||||||||||||| ||||| |
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| T |
34052014 |
cagaaagagaaggtgtaggattaaacaaactacaattcacaac |
34051972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 15237282 - 15237143
Alignment:
| Q |
71 |
gcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttcttagcttgtaatggttcacaatcattgcag |
170 |
Q |
| |
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||||| ||||| || |||||||||||||||||||||||||| || |||||||| || || ||| ||| | ||| ||||| ||||||||||| |||| |
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| T |
15237282 |
gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag |
15237183 |
T |
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| Q |
171 |
aaagtgaaggagttgggttaaacaaactacaatttacaac |
210 |
Q |
| |
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|||| || || ||||| ||||||||||||||||| ||||| |
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| T |
15237182 |
aaagagatggtgttggattaaacaaactacaattcacaac |
15237143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 213
Target Start/End: Complemental strand, 26452900 - 26452751
Alignment:
| Q |
64 |
atctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttcttagcttgtaatggttcacaatc |
163 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||| || | |||| | ||| |||| || |||| || || | ||| |||||| |
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| T |
26452900 |
atctttagcaagatcaatagctataacaccagcactacaacccataccacccaaattaaaacttctaatattaccccttaatttatatttgttaacaatc |
26452801 |
T |
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| Q |
164 |
attgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaag |
213 |
Q |
| |
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|| || |||||||| || ||||| ||||||||||||||||| |||||||| |
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| T |
26452800 |
atagctgaaagtgatggcgttggattaaacaaactacaattaacaacaag |
26452751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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