View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10005_high_2 (Length: 421)

Name: NF10005_high_2
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10005_high_2
NF10005_high_2
[»] chr6 (14 HSPs)
chr6 (6-413)||(1459524-1459932)
chr6 (6-399)||(1470920-1471314)
chr6 (32-397)||(7564750-7565116)
chr6 (135-397)||(370784-371047)
chr6 (204-397)||(176198-176386)
chr6 (261-397)||(1453839-1453976)
chr6 (261-397)||(1465531-1465668)
chr6 (191-262)||(1442234-1442305)
chr6 (349-396)||(24417486-24417533)
chr6 (204-263)||(9819957-9820016)
chr6 (204-263)||(9825637-9825696)
chr6 (351-397)||(1442107-1442153)
chr6 (81-129)||(176039-176087)
chr6 (136-168)||(9825729-9825761)
[»] chr4 (2 HSPs)
chr4 (142-399)||(55419578-55419836)
chr4 (349-397)||(22672126-22672174)
[»] chr7 (1 HSPs)
chr7 (142-397)||(3926855-3927111)
[»] scaffold0044 (1 HSPs)
scaffold0044 (339-396)||(89137-89194)
[»] scaffold0200 (1 HSPs)
scaffold0200 (209-261)||(903-955)
[»] chr5 (4 HSPs)
chr5 (209-261)||(41973595-41973647)
chr5 (344-399)||(11081812-11081867)
chr5 (344-397)||(23766861-23766914)
chr5 (344-397)||(23816709-23816762)
[»] chr3 (9 HSPs)
chr3 (343-399)||(3754598-3754654)
chr3 (344-397)||(803217-803270)
chr3 (349-396)||(2456253-2456300)
chr3 (339-394)||(9608346-9608401)
chr3 (344-397)||(989395-989448)
chr3 (344-397)||(4142133-4142186)
chr3 (344-397)||(4157943-4157996)
chr3 (349-397)||(2442043-2442091)
chr3 (203-243)||(2631220-2631260)
[»] chr1 (2 HSPs)
chr1 (339-397)||(51381454-51381512)
chr1 (345-397)||(51832373-51832425)
[»] chr2 (1 HSPs)
chr2 (355-396)||(34560917-34560958)


Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 6 - 413
Target Start/End: Complemental strand, 1459932 - 1459524
Alignment:
Q  6 agttgttgttttttgctaccaattgaataaatcttgcaaaactctagttaaggttagtaccttaggtaacgatttttggagaacaattccagacttccct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459932 agttgttgttttttgctaccaattgaataaatcttgcaaaactctagttaaggttagtaccttaggtaacgatttttggagaacaattccagacttccct 1459833  T
Q  106 tctcaactcatgggtcaacccgaaagacatccaggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtca 205  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459832 tctcaaatcatgggtcaacccgaaagacatccaggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtca 1459733  T
Q  206 ttctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459732 ttctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatag 1459633  T
Q  306 ggattacttatgcgtccttgctcatgcaaaatctttttt-gatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtttattgtc 404  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459632 ggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtttattgtc 1459533  T
Q  405 ccctttgct 413  Q
    || ||||||    
T  1459532 ccgtttgct 1459524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 399
Target Start/End: Complemental strand, 1471314 - 1470920
Alignment:
Q  6 agttgttgttttttgctaccaattgaataaatcttgcaaaactctagttaaggttagtaccttaggtaacgatttttggagaacaattccagacttccct 105  Q
    |||||| |||||||||||||||  || || || ||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||| ||||||||||    
T  1471314 agttgtcgttttttgctaccaacagactagatgttgcaaaactctagttaaggttcatactttaggtaacaatttttggagaacgattcaagacttccct 1471215  T
Q  106 tctcaactcatgggtcaacccgaaagacatccaggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtca 205  Q
    ||||| |||||||||||||||||| |  ||   |  ||||||||| |||| ||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  1471214 tctcagctcatgggtcaacccgaagggtatatggcgaaatttgtatgtggtaccattaattgggtcgtactagatcaagagaatgactcttcacgggtca 1471115  T
Q  206 ttctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatag 305  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||| |||    
T  1471114 ttctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctag 1471015  T
Q  306 ggattacttatgcgtccttgctcatgcaaaatctttttt-gatatttgggttatgaaagattttggaaataaagaatcttggactaaattgttta 399  Q
    ||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  1471014 ggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgttta 1470920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 32 - 397
Target Start/End: Complemental strand, 7565116 - 7564750
Alignment:
Q  32 ataaatcttgcaaaactctagttaaggttagtaccttaggtaacgatttttggagaacaattccagacttcccttctcaactcatgggtcaacccgaaag 131  Q
    |||||| ||||||||||| ||||||||||  ||| ||||||| | || |||||||||  |||||||||||||||||| ||  || ||||  ||| ||| |    
T  7565116 ataaattttgcaaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctgaagg 7565017  T
Q  132 acatccaggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgag 231  Q
    || |   || ||||||||||||||| ||||| |||||||||||   |||| ||| |||||||||||| ||||||||||||| ||||||||||| ||||||    
T  7565016 acgtgttgggaaatttgtaagtggcgccattcattgggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgag 7564917  T
Q  232 tcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatg 331  Q
    |||||||||||||||||||||||  |||||||| |  |  ||| ||||| | |||||||||| ||||||| |||||||| |||||| |||||||||||      
T  7564916 tcttatcaagagattttgcagccagattatggtgttcaccaacgtctgcgttactttagcttaggggtttgtagggattgcttatgggtccttgctcaca 7564817  T
Q  332 caaaatcttttttg-atatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    | | | |||||||| |||||||||||||||| |||| |||||| || || |||||||||||||||||    
T  7564816 ctacaacttttttgaatatttgggttatgaaggattatggaaacaaggattcttggactaaattgtt 7564750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 135 - 397
Target Start/End: Complemental strand, 371047 - 370784
Alignment:
Q  135 tccaggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtct 234  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||  | ||||  ||  |||| |||||||||||||||||||||||| ||| |||| |    
T  371047 tccaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggtcattctttctcttgatttagaaaaagagtat 370948  T
Q  235 tatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatgcaa 334  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||| | | ||   ||||| ||||| |||||||| ||||||| ||||||||||  | |    
T  370947 tatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgcttatgcatccttgctcagacta 370848  T
Q  335 aatctttt-ttgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    || ||||| | |   |||||||||||||  ||| |||||||||||| |||||||||||||||||    
T  370847 aaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattgtt 370784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 397
Target Start/End: Original strand, 176198 - 176386
Alignment:
Q  204 cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttat 303  Q
    ||||||||||||| |||||||||| ||||| ||||  |||||||  |||||  |||||||| ||      |||||||||||||| ||||||||||||| |    
T  176198 cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct 176291  T
Q  304 agggattacttatgcgtccttgctcatgcaaaatctttttt-gatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    ||||||| | ||||||||||||||||  |  || ||||||| |||||||||  |||||| |||| |||||||||||| |||||||||||||||||    
T  176292 agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattcttggactaaattgtt 176386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 397
Target Start/End: Complemental strand, 1453976 - 1453839
Alignment:
Q  261 tggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatgcaaaat-cttttttgatatttgggttatg 359  Q
    |||| ||||||| ||||||||| |||| |||||||| || | |||||||| ||||||| |||||||||| || ||   || ||| ||||| |||||||||    
T  1453976 tggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatg 1453877  T
Q  360 aaagattttggaaataaagaatcttggactaaattgtt 397  Q
    ||  ||| |||||||||||| ||||||| |||||||||    
T  1453876 aagtattatggaaataaagactcttggaataaattgtt 1453839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 397
Target Start/End: Complemental strand, 1465668 - 1465531
Alignment:
Q  261 tggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatgcaaaat-cttttttgatatttgggttatg 359  Q
    |||| ||||||| ||||||||| |||| |||||||| || | |||||||| ||||||| |||||||||| || ||   || ||| ||||| |||||||||    
T  1465668 tggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatg 1465569  T
Q  360 aaagattttggaaataaagaatcttggactaaattgtt 397  Q
    ||  ||| |||||||||||| ||||||| |||||||||    
T  1465568 aagtattatggaaataaagactcttggaataaattgtt 1465531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 1442305 - 1442234
Alignment:
Q  191 actcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatg 262  Q
    |||||||| || | ||||| ||||||||||||| ||| |||||||||||||||||||||  |||| ||||||    
T  1442305 actcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg 1442234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 24417533 - 24417486
Alignment:
Q  349 tttgggttatgaaagattttggaaataaagaatcttggactaaattgt 396  Q
    ||||| |||||||||| | |||||||||||||||||||||||||||||    
T  24417533 tttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 9820016 - 9819957
Alignment:
Q  204 cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatgg 263  Q
    |||| ||||||||||||| || |  ||||| ||||||||||||||||||||| |||||||    
T  9820016 cattgtttctcttgatttggggagagagtcctatcaagagattttgcagcctgattatgg 9819957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 9825696 - 9825637
Alignment:
Q  204 cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatgg 263  Q
    |||| ||||||||||||| || |  ||||| ||||||||||||||||||||| |||||||    
T  9825696 cattgtttctcttgatttggggacagagtcctatcaagagattttgcagcctgattatgg 9825637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 1442153 - 1442107
Alignment:
Q  351 tgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    ||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  1442153 tgggttatgaaggattatggaattaaagattcttggactaaattgtt 1442107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 176039 - 176087
Alignment:
Q  81 ttggagaacaattccagacttcccttctcaactcatgggtcaacccgaa 129  Q
    ||||||||  ||||||||||||||||| ||||||||||||  |||||||    
T  176039 ttggagaaggattccagacttcccttcgcaactcatgggtatacccgaa 176087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 9825761 - 9825729
Alignment:
Q  136 ccaggaaaatttgtaagtggcaccattaattgg 168  Q
    ||||||||||||||||||||||| |||||||||    
T  9825761 ccaggaaaatttgtaagtggcacaattaattgg 9825729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 399
Target Start/End: Original strand, 55419578 - 55419836
Alignment:
Q  142 aaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaag 241  Q
    |||||||||||||||||||||||||||| ||||   |||| ||||||  ||| |  | |||||||||||||||| ||||||||||| |||||||||||||    
T  55419578 aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag 55419677  T
Q  242 agattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatgcaaaatcttt 341  Q
     ||||  ||| ||  | |||||| ||||||||||  ||    |||| | |||| | ||||  | ||||| |||||||||| |||||||  | || |||||    
T  55419678 tgattccgcatcccgagtatggtctagatgaaccgttggtctacttgaacttgagtgtttccaaggattgcttatgcgtcgttgctcacaccaattcttt 55419777  T
Q  342 ttt-gatatttgggttatgaaagattttggaaataaagaatcttggactaaattgttta 399  Q
    ||| ||||| ||| ||||||| | || |||||||||||| |||||||||||||||||||    
T  55419778 tttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgttta 55419836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 22672174 - 22672126
Alignment:
Q  349 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    ||||||| ||||| || | ||||||||| ||||||||||||||||||||    
T  22672174 tttgggtaatgaaggaatatggaaataaggaatcttggactaaattgtt 22672126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 142 - 397
Target Start/End: Original strand, 3926855 - 3927111
Alignment:
Q  142 aaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaag 241  Q
    ||||||||||||||||| |||||||||| ||||    ||| | ||||  |   |||| |||||||||||||||||||||||||||||||||| |||||||    
T  3926855 aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag 3926954  T
Q  242 agattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatgcaaaatcttt 341  Q
    ||||||  | |||  ||| |||| | ||||| ||  | |||| ||| | ||| ||||||| || ||||| ||| || ||||||| | |  |  || ||||    
T  3926955 agatttcacggcccgattttggtcttgatgatccggttcatatcttcaccttaggggtttctaaggattgcttgtgtgtccttgtttacactgaaacttt 3927054  T
Q  342 -tttgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
     || | ||||||||||||||| |||| |||||||||| | |||||||||||||||||    
T  3927055 gttgggtatttgggttatgaaggattatggaaataaaaattcttggactaaattgtt 3927111  T

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Target: scaffold0044 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 89137 - 89194
Alignment:
Q  339 ttttttgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgt 396  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||    
T  89137 ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 955 - 903
Alignment:
Q  209 tttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattat 261  Q
    |||||||| ||||||| || ||||||||||||||| |||||||||||||||||    
T  955 tttctcttaatttagggaatgagtcttatcaagaggttttgcagcctaattat 903  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 41973647 - 41973595
Alignment:
Q  209 tttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattat 261  Q
    |||||||| ||||||| || ||||||||||||||| |||||||||||||||||    
T  41973647 tttctcttaatttagggaatgagtcttatcaagaggttttgcagcctaattat 41973595  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 11081812 - 11081867
Alignment:
Q  344 tgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgttta 399  Q
    |||| ||||||||||||| || | |||||||||||| |||||||||||||||||||    
T  11081812 tgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgttta 11081867  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 23766914 - 23766861
Alignment:
Q  344 tgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    |||| ||||| |||||||||| | |||||||||||| |||||||||||||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23766861  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 23816762 - 23816709
Alignment:
Q  344 tgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    |||| ||||| |||||||||| | |||||||||||| |||||||||||||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23816709  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 3754598 - 3754654
Alignment:
Q  343 ttgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgttta 399  Q
    ||||| ||||||||||||| || | |||||||||||| |||||||||||||||||||    
T  3754598 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgttta 3754654  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 803270 - 803217
Alignment:
Q  344 tgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    |||| |||||||||||||||| | |||||||||||| ||||||||||| |||||    
T  803270 tgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgtt 803217  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 2456253 - 2456300
Alignment:
Q  349 tttgggttatgaaagattttggaaataaagaatcttggactaaattgt 396  Q
    ||||||||||||| || | |||||||||||| ||||||||||||||||    
T  2456253 tttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 9608401 - 9608346
Alignment:
Q  339 ttttttgatatttgggttatgaaagattttggaaataaagaatcttggactaaatt 394  Q
    ||||||||| ||||||||||||| || | |||||||| ||| ||||||||||||||    
T  9608401 ttttttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 989395 - 989448
Alignment:
Q  344 tgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    |||| ||||||| |||||||| |  ||||||||||| |||||||||||||||||    
T  989395 tgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgtt 989448  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 4142186 - 4142133
Alignment:
Q  344 tgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    |||| ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4142133  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 4157996 - 4157943
Alignment:
Q  344 tgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    |||| ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4157943  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 2442043 - 2442091
Alignment:
Q  349 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  2442043 tttggattatgaaggagtatggaaataaagattcttggactaaattgtt 2442091  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 2631220 - 2631260
Alignment:
Q  203 tcattctttctcttgatttaggaaacgagtcttatcaagag 243  Q
    ||||||||||||||||||||| ||| ||||| |||||||||    
T  2631220 tcattctttctcttgatttagaaaatgagtcatatcaagag 2631260  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 51381512 - 51381454
Alignment:
Q  339 ttttttgatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    |||| |||||||||| |||||||||| | ||||||| |||| |||||||||||||||||    
T  51381512 ttttctgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgtt 51381454  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 51832373 - 51832425
Alignment:
Q  345 gatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 397  Q
    ||||||||| | |||||||| | ||||||| || |||||||||||||||||||    
T  51832373 gatatttggataatgaaagaatatggaaatgaacaatcttggactaaattgtt 51832425  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 34560958 - 34560917
Alignment:
Q  355 ttatgaaagattttggaaataaagaatcttggactaaattgt 396  Q
    |||||||||| | |||||||||| ||||||||||||||||||    
T  34560958 ttatgaaagaatatggaaataaaaaatcttggactaaattgt 34560917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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