View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10005_high_3 (Length: 369)
Name: NF10005_high_3
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10005_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 175 - 353
Target Start/End: Original strand, 3077552 - 3077725
Alignment:
| Q |
175 |
taaaaatcttttcattcctcgccttctaaatcacccaaatagttgaatgccgaatgagcctaagacccttaaccaccttcttgttaaaacctccccacgt |
274 |
Q |
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| T |
3077552 |
taaaaatcttttcattcttcgccgtccaaatcacccaaatagttgcatgccaaatgagcctaagacccttaaccactttct----aaaacctccag-cgt |
3077646 |
T |
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| Q |
275 |
tccaacacgcccaatgattaaagacattttgaagcataataaacgagtaatcaacccacttaaacaactccaaccaaac |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3077647 |
tccaacacgcccaatgattaaagacattttgaagcataataaacgagtaattgacccacttaaacaactccaaccaaac |
3077725 |
T |
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