View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10005_high_5 (Length: 342)

Name: NF10005_high_5
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10005_high_5
NF10005_high_5
[»] chr4 (7 HSPs)
chr4 (19-336)||(42852727-42853044)
chr4 (134-320)||(13568491-13568677)
chr4 (132-295)||(54301124-54301287)
chr4 (132-320)||(40976157-40976345)
chr4 (137-303)||(667194-667360)
chr4 (182-320)||(23543115-23543253)
chr4 (33-104)||(23542898-23542970)
[»] chr3 (8 HSPs)
chr3 (127-329)||(4675435-4675635)
chr3 (122-326)||(18867289-18867492)
chr3 (134-320)||(27901041-27901230)
chr3 (137-303)||(4501647-4501813)
chr3 (137-303)||(4506972-4507138)
chr3 (14-111)||(4675709-4675806)
chr3 (14-111)||(18867561-18867657)
chr3 (212-298)||(546453-546538)
[»] chr7 (8 HSPs)
chr7 (121-329)||(28442955-28443161)
chr7 (121-329)||(41542969-41543175)
chr7 (134-320)||(9702252-9702438)
chr7 (134-320)||(43364761-43364947)
chr7 (132-303)||(37522330-37522501)
chr7 (137-303)||(41454439-41454605)
chr7 (166-303)||(48455915-48456049)
chr7 (14-111)||(28443223-28443320)
[»] chr6 (11 HSPs)
chr6 (121-329)||(10806794-10807000)
chr6 (121-329)||(24908930-24909136)
chr6 (121-329)||(7826497-7826704)
chr6 (127-329)||(14118076-14118276)
chr6 (121-329)||(14122028-14122234)
chr6 (134-320)||(18766200-18766386)
chr6 (163-329)||(10800125-10800289)
chr6 (132-303)||(1051750-1051921)
chr6 (121-268)||(14115876-14116021)
chr6 (14-111)||(14115717-14115814)
chr6 (201-298)||(13105654-13105751)
[»] chr2 (6 HSPs)
chr2 (121-329)||(44611752-44611958)
chr2 (121-329)||(33034259-33034465)
chr2 (138-303)||(43670303-43670468)
chr2 (14-111)||(33034533-33034630)
chr2 (201-299)||(22600450-22600548)
chr2 (220-315)||(28392730-28392827)
[»] scaffold0045 (4 HSPs)
scaffold0045 (127-326)||(2258-2455)
scaffold0045 (127-326)||(8640-8837)
scaffold0045 (14-81)||(2084-2151)
scaffold0045 (14-81)||(8466-8533)
[»] chr8 (6 HSPs)
chr8 (132-299)||(2267872-2268039)
chr8 (132-303)||(44245428-44245599)
chr8 (132-303)||(38657774-38657936)
chr8 (168-303)||(5063562-5063695)
chr8 (131-259)||(27666599-27666727)
chr8 (134-320)||(9906430-9906616)
[»] chr5 (4 HSPs)
chr5 (121-303)||(9334660-9334840)
chr5 (182-329)||(40820901-40821046)
chr5 (169-303)||(4693775-4693907)
chr5 (122-231)||(20899936-20900045)
[»] chr1 (5 HSPs)
chr1 (132-303)||(47294550-47294721)
chr1 (168-303)||(9316491-9316626)
chr1 (122-231)||(21818092-21818201)
chr1 (203-310)||(43102618-43102725)
chr1 (227-302)||(21815349-21815424)
[»] scaffold1487 (1 HSPs)
scaffold1487 (134-272)||(1610-1748)
[»] scaffold0265 (2 HSPs)
scaffold0265 (122-231)||(14608-14717)
scaffold0265 (227-302)||(17385-17460)
[»] scaffold0202 (1 HSPs)
scaffold0202 (18-75)||(6913-6970)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 42852727 - 42853044
Alignment:
Q  19 aagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaactatataaaggccattcactcatatcagcaagagagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42852727 aagaaagctcaactcgccatggcgagaacacctactcgcgaggcgagttgagtcagaacagaactatataaaggccattcactcatatcagcaagagagg 42852826  T
Q  119 atccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctc 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42852827 atccagatagaacttaaggagcaaggagcacaaggattgaacggatctccaagatcattaagacatcatggcttgcttccattccatctcttcttttctc 42852926  T
Q  219 cttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42852927 cttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattccctttgattatgttgttgtt 42853026  T
Q  319 tgttcttagttccctttg 336  Q
    ||||||||||||||||||    
T  42853027 tgttcttagttccctttg 42853044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 13568677 - 13568491
Alignment:
Q  134 aaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttacca 233  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13568677 aaggagcaaggagcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttacca 13568578  T
Q  234 tgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||    
T  13568577 tgacaatgagtagctagactctttttgttgggattaaatgtaattaactctattggtatgtattccctttgattatgatgttgtttg 13568491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 132 - 295
Target Start/End: Original strand, 54301124 - 54301287
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||||||||||| |||||||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54301124 ttaaggagcaaggggcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttac 54301223  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgta 295  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  54301224 catgacaatgagtagctagactctttttgttgggattaaatgtaatcaactctattagtatgta 54301287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 132 - 320
Target Start/End: Original strand, 40976157 - 40976345
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||||||||||| ||| |||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  40976157 ttaaggagcaaggggcagaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctctttgtaaggttac 40976256  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    |||||||||| |||| || ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||    
T  40976257 catgacaatgagtagttagactctttttgttgggattaaatgtaattaactctattagcatgtattccctttgattatgatgttgtttg 40976345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 667194 - 667360
Alignment:
Q  137 gagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatga 236  Q
    |||||||| |||||||||||||||||||   |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  667194 gagcaaggggcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttacaatga 667293  T
Q  237 caatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    ||||| ||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||    
T  667294 caatgagtagctaaactctttttgttgtgattaaatgtagttaactctattagtatgtattcccttt 667360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 23543115 - 23543253
Alignment:
Q  182 catcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaac 281  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||| |||||||    
T  23543115 catcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaataagtagctagactctttttgttgggattaaatgcaatcaac 23543214  T
Q  282 tctattagtatgtattccctttaattatgttgttgtttg 320  Q
      ||||||||||||||| |||| |||||| |||||||||    
T  23543215 aatattagtatgtattctctttgattatgatgttgtttg 23543253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 23542898 - 23542970
Alignment:
Q  33 cgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaactatat-aaaggccattcactcat 104  Q
    |||||| ||||  ||| ||||| |||||| ||||||||||||||||||| | ||| |||||||||| ||||||    
T  23542898 cgccattgcgaatacatctacttgcgaggcgagttgagtcagaacagaattgtataaaaggccatttactcat 23542970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 127 - 329
Target Start/End: Complemental strand, 4675635 - 4675435
Alignment:
Q  127 agaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaag 226  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||||    
T  4675635 agaacttaaggagcaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctccttgtaag 4675538  T
Q  227 gttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttgttctta 326  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  4675537 gttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaatcaactctattagtatgtattccctttgattatgatgttgtttgttctta 4675438  T
Q  327 gtt 329  Q
    |||    
T  4675437 gtt 4675435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 122 - 326
Target Start/End: Complemental strand, 18867492 - 18867289
Alignment:
Q  122 cagatagaacttaa-ggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    |||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||   ||| ||||| ||||||||||||    
T  18867492 cagagagaacttaaaggagcaaggagcacaaggattaaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctattcttttctcct 18867395  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||    
T  18867394 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgagattaaatgtaatcaactctattaatatgtattccttttgattatgatgttgtttg 18867295  T
Q  321 ttctta 326  Q
    ||||||    
T  18867294 ttctta 18867289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 27901230 - 27901041
Alignment:
Q  134 aaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccat---ctcttcttttctccttgtaaggtta 230  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||| |||||||   |||||||||||||||||||||||||    
T  27901230 aaggagcaaggagcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatgatctcttcttttctccttgtaaggtta 27901131  T
Q  231 ccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||    
T  27901130 ccatgacaatgagtagctagactctttttgttgggattaaatgtaatcaactcttttagtatgtattccctttgattatgatgttgtttg 27901041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 4501813 - 4501647
Alignment:
Q  137 gagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatga 236  Q
    |||||||  |||||||||||||||||||   |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4501813 gagcaagaggcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatga 4501714  T
Q  237 caatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  4501713 caatgagtagctaaactctttttgttgggattaaatgtagttaactctattagtatgtattcccttt 4501647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 4507138 - 4506972
Alignment:
Q  137 gagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatga 236  Q
    |||||| | |||||||||||||| ||||   |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4507138 gagcaaagggcacaaggattgaaaggattcacaagatcattgagacataatggcttgcttccattccatctcttcttttctccttgtaaggttaccatga 4507039  T
Q  237 caatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  4507038 caatgagtagctaaactctttttgttgggattaaatgtagttaactctattagtatgtattcccttt 4506972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 4675806 - 4675709
Alignment:
Q  14 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaactatataaaggccattcactcatatcagca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |||||||    
T  4675806 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggcgagttgagtcagatcaaaactatataaaggccattcactcagatcagca 4675709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 18867657 - 18867561
Alignment:
Q  14 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaactatataaaggccattcactcatatcagca 111  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||   |||||||||| ||||||||||||||||||||    
T  18867657 aggggaagaaagcacaactcgccatggcaagaacacctactcgcgaggcgagttgagtcagaac-ttactatataaaagccattcactcatatcagca 18867561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 546538 - 546453
Alignment:
Q  212 ttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattc 298  Q
    ||||||||||||||||||||||||| |||| |||||||||| | |||| |||||||||||||||||  |||||| || |||||||||    
T  546538 ttttctccttgtaaggttaccatgaaaatgagtagctaaacac-ttttgttgggattaaatgtaatatactctactaatatgtattc 546453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 28443161 - 28442955
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  28443161 ccagagagaacttaaggagcaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 28443064  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  28443063 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattagatgtaatcaactctattagtatgtattccttttgattatgatgttgtttg 28442964  T
Q  321 ttcttagtt 329  Q
    |||||||||    
T  28442963 ttcttagtt 28442955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 41543175 - 41542969
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  41543175 ccagagagaacttaaggagcaaggagcacaaggattgaaggaatctctaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 41543078  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  41543077 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaatcaactctattagtatgtattccctttgattatgatgttgtttg 41542978  T
Q  321 ttcttagtt 329  Q
    |||||||||    
T  41542977 ttcttagtt 41542969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 9702438 - 9702252
Alignment:
Q  134 aaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttacca 233  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9702438 aaggagcaaggagcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttacca 9702339  T
Q  234 tgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||    
T  9702338 tgacaatgagtagctagactctttttgttgggattaaatgtaattaactctattggtatgtattccctttgattatgatgttgtttg 9702252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 43364947 - 43364761
Alignment:
Q  134 aaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttacca 233  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43364947 aaggagcaaggagcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttacca 43364848  T
Q  234 tgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    | |||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  43364847 taacaatgagtagctagactttttttgttgggattaaatgtaatcaactctattagtatgtattccctttgattatgatgttgtttg 43364761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 37522501 - 37522330
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||||||||||| |||||||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  37522501 ttaaggagcaaggggcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttattttctccttgtaaggttac 37522402  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||||    
T  37522401 catgacaatgtgtagctaaactctttttgttgggattaaatgtagttaactctattagtatgtattaccttt 37522330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 41454439 - 41454605
Alignment:
Q  137 gagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatga 236  Q
    |||||||| |||||||||||||||||||   |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41454439 gagcaaggggcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatga 41454538  T
Q  237 caatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    ||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||||    
T  41454539 caatgagtagctaaactctttttgttgggattaaatgtagttaactctattagtatgtattaccttt 41454605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 48456049 - 48455915
Alignment:
Q  166 tccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattggg 265  Q
    |||||||||||| ||||||||||||||| ||  ||||| | |||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48456049 tccaagatcattgagacatcatggcttggtt--attccttttctcttcttctccttgtaaggttaccatgacaatgtgtagctaaactcttttt-ttggg 48455953  T
Q  266 attaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||||| | |||||||||||||||||||||||||    
T  48455952 attaaatgtagttaactctattagtatgtattcccttt 48455915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 28443320 - 28443223
Alignment:
Q  14 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaactatataaaggccattcactcatatcagca 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||| |||||||    
T  28443320 aggggatgaaagctcaactcgccatggcgagaacacctactcgcgaggcgagttgagtcagatcaaaactatataaagaccattcactcagatcagca 28443223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 121 - 329
Target Start/End: Original strand, 10806794 - 10807000
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  10806794 ccagagagaacttaaggagcaaggagcacaaggattgagggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 10806891  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  10806892 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaatcaactctattagtatgtattccctttgattatgatgttgtttg 10806991  T
Q  321 ttcttagtt 329  Q
    |||||||||    
T  10806992 ttcttagtt 10807000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 24909136 - 24908930
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  24909136 ccagagagaacttaaggagcaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 24909039  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  24909038 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaatcaactctattagtatgtattccctttgactatgatgttgtttg 24908939  T
Q  321 ttcttagtt 329  Q
    |||||||||    
T  24908938 ttcttagtt 24908930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 7826704 - 7826497
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  7826704 ccagagagaacttaaggagcaaggagcacaaggattgaagtaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 7826607  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactcttttta-ttgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgttt 319  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7826606 tgtaaggttaccatgacaatgtgtagctaaactcttttttgttgggattgaatgtaatcaactctattagtatgtattccctttgattatgatgttgttt 7826507  T
Q  320 gttcttagtt 329  Q
    ||||||||||    
T  7826506 gttcttagtt 7826497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 127 - 329
Target Start/End: Original strand, 14118076 - 14118276
Alignment:
Q  127 agaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaag 226  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||||    
T  14118076 agaacttaaggagcaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctccttgtaag 14118173  T
Q  227 gttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttgttctta 326  Q
    ||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  14118174 gttaccatgacaatgtgtagctaaactatttttgtcgggattgaatgtaatcaactctattagtatgtatttcctttgattatgatgttgtttgttctta 14118273  T
Q  327 gtt 329  Q
    |||    
T  14118274 gtt 14118276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 121 - 329
Target Start/End: Original strand, 14122028 - 14122234
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  14122028 ccagagagaacttaaggagcaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 14122125  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||| ||||| | |||| |||||||||    
T  14122126 tgtaaggttaccatgacaatgtgtagctaaactatttttgtcgggattgaatgtaatcaactctattagtatgtattacctttgaatatgatgttgtttg 14122225  T
Q  321 ttcttagtt 329  Q
    |||||||||    
T  14122226 ttcttagtt 14122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 18766386 - 18766200
Alignment:
Q  134 aaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttacca 233  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  18766386 aaggagcaaggagcacaaggattgaagggattcgcaagatcattgagacatcatggtttgcttccattccatctcttcttttctccttgtaaggttacca 18766287  T
Q  234 tgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  18766286 tgacaatgagtagctagactctttttgttgggattaaatgtaatcaactctattagtatgtattccctttgattatgatgttgtttg 18766200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 163 - 329
Target Start/End: Original strand, 10800125 - 10800289
Alignment:
Q  163 atctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttatt 262  Q
    ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10800125 atctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgtt 10800222  T
Q  263 gggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttgttcttagtt 329  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  10800223 gggattgaatgtaatcaactctattagtatgtattccctttgattatgatgttgtttgttcttagtt 10800289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 1051921 - 1051750
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    |||||||||||   |||||| ||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1051921 ttaaggagcaacaggcacaaagattgaagggattcacaagatcattgagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 1051822  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||||| |||| |||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||    
T  1051821 catgacaatgagtagttaaactctttttgttgggattaaatgtagttaactctattaatatgtattcccttt 1051750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 14115876 - 14116021
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  14115876 ccagagagaacttaaggagcaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgct--catttcatctcttcttttctcct 14115973  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggatt 268  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14115974 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgggatt 14116021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 14115717 - 14115814
Alignment:
Q  14 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaactatataaaggccattcactcatatcagca 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||| |||||||    
T  14115717 aggggatgaaagctcaactcgccatggcgagaacacctactcgcgaggcgagttgagtcagatcaaaactatataaagaccattcactcagatcagca 14115814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 13105751 - 13105654
Alignment:
Q  201 tccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattc 298  Q
    |||||||||| | |||||||||||||||| |||||| ||||  || ||||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  13105751 tccatctcttatcttctccttgtaaggtttccatgagaatgaataactaaactctttttattgggattaaatgtaatcaactctactaatatatattc 13105654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 44611958 - 44611752
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  44611958 ccagagagaacttaaggagcaaggagcacaaggattgaagtaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 44611861  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  44611860 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaatcaactctattagtatgtattccctttgattatgatgttgtttg 44611761  T
Q  321 ttcttagtt 329  Q
    |||||||||    
T  44611760 ttcttagtt 44611752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 33034465 - 33034259
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  33034465 ccagagagaacttaaggagcaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctcct 33034368  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||| || |||||| |||||||||    
T  33034367 tgtaaggttaccatgacaatgtgtagctaaactctttttgttgagattgaatgtaatcaactctattaatatgtattcccattgattatgatgttgtttg 33034268  T
Q  321 ttcttagtt 329  Q
    |||||||||    
T  33034267 ttcttagtt 33034259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 43670468 - 43670303
Alignment:
Q  138 agcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgac 237  Q
    ||||||| |||||||||||||||||||   |||||||||| |||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  43670468 agcaaggggcacaaggattgaagggattcacaagatcattgagacatcatgacttgctttcattccatctcttcttttctccttgtaaggttaccatgac 43670369  T
Q  238 aatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  43670368 aatgagtagctaaactctttttgttgggattaaatgtagttaactctattagtatgtattcccttt 43670303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 33034630 - 33034533
Alignment:
Q  14 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaactatataaaggccattcactcatatcagca 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  33034630 aggggaagaaagctcaactcgccatggcgagagcacctactcgcgaggcgagttgagtcagaacataactatataaaggccattcactcagatcagca 33034533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 22600548 - 22600450
Alignment:
Q  201 tccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcc 299  Q
    |||||||||| | || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  22600548 tccatctcttttcttttccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgtaatcaactctactagtatgtattcc 22600450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 28392827 - 28392730
Alignment:
Q  220 ttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctat--tagtatgtattccctttaattatgttgtt 315  Q
    ||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||| |||  ||||||||||||  ||| |||||| ||||    
T  28392827 ttgtaaggttaccatgaaaatgcgtaactaaactctttttgttgggattaaatgtaatcaactatatactagtatgtattcttttttattatgatgtt 28392730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 127 - 326
Target Start/End: Original strand, 2258 - 2455
Alignment:
Q  127 agaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaag 226  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||||    
T  2258 agaacttaaggaacaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatctcttcttttctccttgtaag 2355  T
Q  227 gttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttgttctta 326  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||   ||| |||||| |||||||||||||||    
T  2356 gttaccatgacaatgtgtagctaaactctttttgttgagattaaatctaatcaactctattagtatgtatttattttgattatgatgttgtttgttctta 2455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 127 - 326
Target Start/End: Original strand, 8640 - 8837
Alignment:
Q  127 agaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaag 226  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||| ||| ||||||||||||||||||||    
T  8640 agaacttaaggaacaaggagcacaaggattgaaggaatctccaagatcattgagacatcatggcttgctc--atttcatttcttcttttctccttgtaag 8737  T
Q  227 gttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttgttctta 326  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||   ||| |||||| |||||||||||||||    
T  8738 gttaccatgacaatgtgtagctaaactctttttgttgagattaaatctaatcaactctattagtatgtatttattttgattatgatgttgtttgttctta 8837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 2084 - 2151
Alignment:
Q  14 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaa 81  Q
    |||||||||||||| |||||||||| ||||||||| | |||||||||| |||||| ||||||||||||    
T  2084 aggggaagaaagcttaactcgccattgcgagaacatccactcgcgaggcgagttgtgtcagaacagaa 2151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 8466 - 8533
Alignment:
Q  14 aggggaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcagaacagaa 81  Q
    |||||||||||||| |||||||||| ||||||||| | |||||||||| |||||| ||||||||||||    
T  8466 aggggaagaaagcttaactcgccattgcgagaacatccactcgcgaggcgagttgtgtcagaacagaa 8533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 132 - 299
Target Start/End: Original strand, 2267872 - 2268039
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||||||||||| |||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2267872 ttaaggagcaaggggcacaaggattgaagggattcacaagatcattgagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 2267971  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcc 299  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||    
T  2267972 catgacaatgagtagctaaactctttttgttgggattaaatgtagttaactctattagtatgcattcc 2268039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 44245428 - 44245599
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||||||||||| |||||||||||||||||||   |||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  44245428 ttaaggagcaaggggcacaaggattgaagggattcacaagatcattgagacatcatgccttgcttccattccatctcttcttttctccttgtaaggttac 44245527  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  44245528 catgacaatgagtagctaaactctttttgttgggattaaatgtagttaactctattagtatgtattcccttt 44245599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 38657936 - 38657774
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||||||||||| |||||| ||||||||||||   |||||||||| | |||||||||||||||| |||||||||||          |||||||||||||    
T  38657936 ttaaggagcaaggggcacaaagattgaagggattcacaagatcattgatacatcatggcttgcttttattccatctc----------cttgtaaggttac 38657847  T
Q  232 catgacaatgtgtagctaaactctttttatt-gggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||||| ||||||||||||||||| || ||||||||||| | | |||||||||||||||||||||||||    
T  38657846 catgacaatgagtagctaaactctttttgttggggattaaatgcagttaactctattagtatgtattcccttt 38657774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 5063562 - 5063695
Alignment:
Q  168 caagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggat 267  Q
    |||||||||| ||||||||||||||| ||  ||||| | |||  |  ||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5063562 caagatcattgagacatcatggcttggtt--attccttttctcttcgtcttcttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggat 5063659  T
Q  268 taaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||| | |||||||||||||||||||||||||    
T  5063660 taaatgtagttaactctattagtatgtattcccttt 5063695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 27666599 - 27666727
Alignment:
Q  131 cttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggtta 230  Q
    |||||||| ||||||||||||||||||||| |||   |||||||||| |||||||| |||||||||| ||| ||||| ||||||||||||||||| ||||    
T  27666599 cttaaggaacaaggagcacaaggattgaagagattcacaagatcattgagacatcaaggcttgcttccatttcatcttttcttttctccttgtaatgtta 27666698  T
Q  231 ccatgacaatgtgtagctaaactcttttt 259  Q
    ||||||||||| || |||| |||||||||    
T  27666699 ccatgacaatgagttgctatactcttttt 27666727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 134 - 320
Target Start/End: Original strand, 9906430 - 9906616
Alignment:
Q  134 aaggagcaaggagc-acaaggattgaag-ggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||| |||||||| ||||||||||||| |||  | |||||||||| |||||| |||| ||| ||  ||||| | |||  | ||||||||||||||||||    
T  9906430 aaggaacaaggagctacaaggattgaagaggacttgcaagatcattgagacattatggtttggtt--attccttttctcttcttctccttgtaaggttac 9906527  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctttaattatgttgttgtttg 320  Q
    |||||||||| |||  || ||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||| |||||| |||||||||    
T  9906528 catgacaatgagtatgtagactctttttgttgggattaaatgtaattaactctactagtatgtattccttttgattatgatgttgtttg 9906616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 121 - 303
Target Start/End: Original strand, 9334660 - 9334840
Alignment:
Q  121 ccagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcct 220  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    ||| ||||||||||||||||||    
T  9334660 ccagagagaacctaaggagcaaggagcacaaggattgaagggatctccaagatcattgagacatcatggcttgcac--atttcatctcttcttttctcct 9334757  T
Q  221 tgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  9334758 tgtaaggttaccatgaaaatgagtagctaaactctttttgttgggattaaatgtagttaactctattagtatgtattcccttt 9334840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 40820901 - 40821046
Alignment:
Q  182 catcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaac 281  Q
    ||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  40820901 catcatggcttgctc--atttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaatcaac 40820998  T
Q  282 tctattagtatgtattccctttaattatgttgttgtttgttcttagtt 329  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||    
T  40820999 tctattagtatgtattccctttgattatgatgttgtttgttcttagtt 40821046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 4693775 - 4693907
Alignment:
Q  169 aagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggatt 268  Q
    ||||||||  ||||||||||||||| ||  ||||| | |||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4693775 aagatcatcgagacatcatggcttggtt--attccttttctcatattctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggatt 4693872  T
Q  269 aaatgtaatcaactctattagtatgtattcccttt 303  Q
    ||||||| | |||||||||||||||||||||||||    
T  4693873 aaatgtagttaactctattagtatgtattcccttt 4693907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 20900045 - 20899936
Alignment:
Q  122 cagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcctt 221  Q
    |||| ||||| |||||| ||| || || ||||||||||| |||   |||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||    
T  20900045 cagagagaacctaaggatcaaagatcataaggattgaagagattcacaagatcattgagacatcatggctggcttccattccatctcttcctttctcctt 20899946  T
Q  222 gtaaggttac 231  Q
    ||||||||||    
T  20899945 gtaaggttac 20899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 47294721 - 47294550
Alignment:
Q  132 ttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttac 231  Q
    ||||||||||||| |||||||||||||||||||   || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47294721 ttaaggagcaaggggcacaaggattgaagggattcacaggatcattgagacatcatggcttgcttctattccatctcttcttttctccctgtaaggttac 47294622  T
Q  232 catgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattcccttt 303  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||    
T  47294621 catgacaatgagtagctaaactctttttgttgggattaaatgtagttaactttattagtatgtattcccttt 47294550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 9316626 - 9316491
Alignment:
Q  168 caagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggat 267  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||    
T  9316626 caagatcattgagacatcatggcttgcttccattccatctcttcttttctccttataaggttaccatgacaatgagtagctagactctttttgttgggat 9316527  T
Q  268 taaatgtaatcaactctattagtatgtattcccttt 303  Q
    ||||||||||||||||||||||||||||||||||||    
T  9316526 taaatgtaatcaactctattagtatgtattcccttt 9316491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 21818201 - 21818092
Alignment:
Q  122 cagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcctt 221  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||   |||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  21818201 cagagagaacctaaggagcaaggatcacaaggattgaagggattcacaagatcattgagacgtcatggcttgcttccattccatctcttcttttctcctt 21818102  T
Q  222 gtaaggttac 231  Q
    ||||||||||    
T  21818101 gtaaggttac 21818092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 310
Target Start/End: Complemental strand, 43102725 - 43102618
Alignment:
Q  203 catctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctt 302  Q
    |||||||| | |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||    
T  43102725 catctcttttcttctccttgtaaggttaccatgacaatgagtagataaactctttttgttgggattaaatgtaatctactctattagtatgcattccttt 43102626  T
Q  303 taattatg 310  Q
    | ||||||    
T  43102625 tgattatg 43102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 21815424 - 21815349
Alignment:
Q  227 gttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctt 302  Q
    ||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  21815424 gttaccatgacaatgagtatctagactctttttgttgggattaaatgtaatcaactcaattagtttgtattccctt 21815349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 1610 - 1748
Alignment:
Q  134 aaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttacca 233  Q
    |||||| ||||| ||||| ||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1610 aaggagaaaggaacacaatgattgaagggattcacaagatcattgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttacca 1709  T
Q  234 tgacaatgtgtagctaaactctttttattgggattaaat 272  Q
    |||||||| ||||||| ||||||||| | ||||||||||    
T  1710 tgacaatgagtagctagactctttttgtcgggattaaat 1748  T

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Target: scaffold0265 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 14608 - 14717
Alignment:
Q  122 cagatagaacttaaggagcaaggagcacaaggattgaagggatctccaagatcattaagacatcatggcttgcttctattccatctcttcttttctcctt 221  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||   |||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  14608 cagagagaacctaaggagcaaggatcacaaggattgaagggattcacaagatcattgagacgtcatggcttgcttccattccatctcttcttttctcctt 14707  T
Q  222 gtaaggttac 231  Q
    ||||||||||    
T  14708 gtaaggttac 14717  T

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Target: scaffold0265; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 17385 - 17460
Alignment:
Q  227 gttaccatgacaatgtgtagctaaactctttttattgggattaaatgtaatcaactctattagtatgtattccctt 302  Q
    ||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  17385 gttaccatgacaatgagtatctagactctttttgttgggattaaatgtaatcaactcaattagtttgtattccctt 17460  T

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Target: scaffold0202 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 6970 - 6913
Alignment:
Q  18 gaagaaagctcaactcgccatggcgagaacacctactcgcgaggtgagttgagtcaga 75  Q
    |||||||  ||||||||||||||||||  || |||||||||||| ||||| |||||||    
T  6970 gaagaaacatcaactcgccatggcgagtgcatctactcgcgaggcgagttcagtcaga 6913  T

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