View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10005_low_1 (Length: 509)
Name: NF10005_low_1
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10005_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 82 - 450
Target Start/End: Complemental strand, 2099611 - 2099244
Alignment:
| Q |
82 |
aagcttggttctattcgtcggattcaaaatctaatggattataagaagtgtttggtggggtacgatacttatttggtggatgattttgctttgtttattt |
181 |
Q |
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| T |
2099611 |
aagcttggttatattcgtcggattcaaaatctaatggattataagaagtgtttggtggggtacgatacttatttggtggatgaccttgctttgtttattt |
2099512 |
T |
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| Q |
182 |
attttgttctttttggatgttggagaaaccactattctattgtttgcttttggttaagctatttgacatttggttctaagaattacgtatttggttcgta |
281 |
Q |
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| T |
2099511 |
attttgttctttttggatgttggagaaaccactattctattgtttgcatttggttaagctatttgacatttggttctaagaattacgtatttggttcgta |
2099412 |
T |
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| Q |
282 |
gactttgtgaaaagaaagagnnnnnnnnncgactttcctttgcaattgggtttgtctatttggtactattttgtgggtacaatttagtcgatagtttatc |
381 |
Q |
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| T |
2099411 |
gactgtgtgaaaagaaata-aaaaaaaaacgactttcctttgcaattgggtttgtctatttggtactattttgtgggtacaatttagtcgatagtttatc |
2099313 |
T |
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| Q |
382 |
ttgctttgtgttgtttggtcattggtccttgattgattgtctctttctacattggtctcttctatttta |
450 |
Q |
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| T |
2099312 |
ttgctttgcattgtttggtcattggtccttgattgattgtgtctttctacattggtctcttctatttta |
2099244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 2098967 - 2098918
Alignment:
| Q |
449 |
tattggttatccgtcaattaattcttttgattgattgtctctctccctct |
498 |
Q |
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| T |
2098967 |
tattggttatctctcaattaattcttttgattgattgtctctctccctct |
2098918 |
T |
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