View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10005_low_2 (Length: 461)
Name: NF10005_low_2
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10005_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 446
Target Start/End: Original strand, 18669905 - 18670338
Alignment:
| Q |
14 |
aggggacccaaaatatgtacctgtaaaaggcacagtgttcaaccaactattctacttcaagaaactccatgattaccatgctcaattagcaaaaactcat |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18669905 |
aggggacccaaaatatgcacctgtaaaaggcacagtgttcaaccaactattctacttcaagaaactccatgattaccatgctcaattagcaaaaactcat |
18670004 |
T |
|
| Q |
114 |
ccaactatgaggcttcttgcaccaaatcaaagtgaagttgtacacaatagatgtgagaaatattgaacatatattgaaaaccaattttgataagtattct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18670005 |
ccaactatgaggcttcttgcaccaaatcaaagtga-gttgtacagaatagatgtgagaaatattgaacatatattgaaaaccaattttgataagtattct |
18670103 |
T |
|
| Q |
214 |
aaaggtaactataatcaagatattattactgatctttttggtgaggggatttttgctgttgatggtgacaagtggaagcaacagaggaaaattgctagct |
313 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18670104 |
aaaggtaagtataatcaagatattattactgatctttttggtgaggggatttttgctgttgatggtgacaagtggaagcaacagaggaaaattgctagct |
18670203 |
T |
|
| Q |
314 |
atgaattttctacaagagttcttcgagattttagttgttctgtgttcagaaagaatgcttccaagttggtt--agttatatcagaattttctcatgaggg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18670204 |
atgaattttctacaagagttcttcgagattttagttgttctgtgttcagaaagaatgcttccaagttggttagagttatatcagaattttctcatgaggg |
18670303 |
T |
|
| Q |
412 |
tctggtttttgatatgcaagtgagtagttttattt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18670304 |
tctggtttttgatatgcaagtgagtagttttattt |
18670338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 446
Target Start/End: Complemental strand, 13115533 - 13115100
Alignment:
| Q |
14 |
aggggacccaaaatatgtacctgtaaaaggcacagtgttcaaccaactattctacttcaagaaactccatgattaccatgctcaattagcaaaaactcat |
113 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13115533 |
aggggacccaaaatatgcacctgtgaaaggcacagtgttcaaccaacttttcaacttcaagaaactccatgattaccatgctcaattagcaaaaactcat |
13115434 |
T |
|
| Q |
114 |
ccaactatgaggcttcttgcaccaaatcaaagtgaagttgtacacaatagatgtgagaaatattgaacatatattgaaaaccaattttgataagtattct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13115433 |
ccaactatgaggcttcttgcaccaaatcaaagtga-gttgtacacaatagatgtgagaaatattgaacatatattgaaaaccaattttgataagtattct |
13115335 |
T |
|
| Q |
214 |
aaaggtaactataatcaagatattattactgatctttttggtgaggggatttttgctgttgatggtgacaagtggaagcaacagaggaaaattgctagct |
313 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
13115334 |
aaaggtaagtataataaagatattattactgatcttcttggtgaggggatttttgctgttgatggtgacaagtggaagcagcagagaaaaattgctagct |
13115235 |
T |
|
| Q |
314 |
atgaattttctacaagagttcttcgagattttagttgttctgtgttcagaaagaatgcttccaagttggtt--agttatatcagaattttctcatgaggg |
411 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13115234 |
atgaattttctacaagagttcttagagattttagttgttctgtgttcagaaagaatgcttccaagttggttagagttatatcagaattttctcatgaggg |
13115135 |
T |
|
| Q |
412 |
tctggtttttgatatgcaagtgagtagttttattt |
446 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13115134 |
tttggtttttgatatgcaagtgagtagttttattt |
13115100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 13106059 - 13105632
Alignment:
| Q |
14 |
aggggacccaaaatatgtacctgtaaaaggcacagtgttcaaccaactattctacttcaagaaactccatgattaccatgctcaattagcaaaaactcat |
113 |
Q |
| |
|
||||||| |||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||| |||| |
|
|
| T |
13106059 |
aggggactcaaagtatacacctgttaaaggcacagtgttcaaccaacttttctacttcaagaaactctatgattaccatgctcaattggccaaaattcat |
13105960 |
T |
|
| Q |
114 |
ccaactatgaggcttcttgcaccaaatcaaagtgaagttgtacacaatagatgtgagaaatattgaacatatattgaaaaccaattttgataagtattct |
213 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| |
|
|
| T |
13105959 |
ccaacttatagacttcttgcaccaaatcatagtga-gttgtacacaatagatgtgagaaatattgaacatgtattgaaaacaaactttgataaatattct |
13105861 |
T |
|
| Q |
214 |
aaaggtaactataatcaagatattattactgatctttttggtgaggggatttttgctgttgatggtgacaagtggaagcaacagaggaaaattgctagct |
313 |
Q |
| |
|
| |||||| |||| |||||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
13105860 |
agaggtaagtatagtcaagatattatgacagatctttttggtgaggggatttttgttgttgatggtaacaagtggaagcagcagaggaaggttgctagct |
13105761 |
T |
|
| Q |
314 |
atgaattttctacaagagttcttcgagattttagttgttctgtgttcagaaagaatgcttccaagttggt--tagttatatcagaattttctcatgaggg |
411 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
13105760 |
atgaattctccacaagagttcttagagattttagttgctctgtgtttagaaagaatgctgccaagttggtcagagttatatcagaattttatcatgaggg |
13105661 |
T |
|
| Q |
412 |
tctggtttttgatatgcaagtgagtagtt |
440 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
13105660 |
tcttgtttttgatatgcaagtgagtagtt |
13105632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 13100267 - 13099837
Alignment:
| Q |
14 |
aggggacccaaaatatgtacctgtaaaaggcacagtgttcaaccaactattctacttcaagaaactccatgattaccatgctcaattagcaaaaactcat |
113 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||| |||||| | || |||| |||| |
|
|
| T |
13100267 |
aggggacccaaaatatgcacctgttaaaggcacagtgttcaaccatcttttctacttcaacaaactctatgattaccaagctcaaatggccaaaattcat |
13100168 |
T |
|
| Q |
114 |
ccaactatgaggcttcttgcaccaaatcaaagtga--agttgtacacaatagatgtgagaaatattgaacatatattgaaaaccaattttgataagtatt |
211 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
13100167 |
ccaacttatagacttcttgcaccaaatcaaagtgatcagttgtacacaatagatgtgagaaatattgaacatgtattgaaaaccaattttgataaatatt |
13100068 |
T |
|
| Q |
212 |
ctaaaggtaactataatcaagatattattactgatctttttggtgaggggatttttgctgttgatggtgacaagtggaagcaacagaggaaaattgctag |
311 |
Q |
| |
|
||| |||||| |||| ||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||| || |
|
|
| T |
13100067 |
ctagaggtaagtatagtcaagatgttatgacagatctttttggtgaggggatttttgccgttgatggtgacaagtggagacagcagaggaaagttgcaag |
13099968 |
T |
|
| Q |
312 |
ctatgaattttctacaagagttcttcgagattttagttgttctgtgttcagaaagaatgcttccaagttggt--tagttatatcagaattttctcatgag |
409 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||| ||| ||| |
|
|
| T |
13099967 |
ctatgaattctccacaagagttcttagagattttagttgttctgtgtttagaaagaatgctgccaagttggtcagagttatatcagtattttatcacgag |
13099868 |
T |
|
| Q |
410 |
ggtctggtttttgatatgcaagtgagtagtt |
440 |
Q |
| |
|
||||| || |||||||||||||| ||||||| |
|
|
| T |
13099867 |
ggtcttgtctttgatatgcaagtaagtagtt |
13099837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 372
Target Start/End: Complemental strand, 13080506 - 13080377
Alignment:
| Q |
243 |
tgatctttttggtgaggggatttttgctgttgatggtgacaagtggaagcaacagaggaaaattgctagctatgaattttctacaagagttcttcgagat |
342 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| || |||| ||| || ||||| || |||| | || |||||||||||||||||| ||||| |
|
|
| T |
13080506 |
tgatcttttgggtgatgggatttttgctgttgatggtgctaaatggaggcaccaaaggaagctttctagtttggagttttctacaagagttcttagagat |
13080407 |
T |
|
| Q |
343 |
tttagttgttctgtgttcagaaagaatgct |
372 |
Q |
| |
|
||||| || ||| ||||||| ||||||| |
|
|
| T |
13080406 |
tttagctgcaatgttttcagaaggaatgct |
13080377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University