View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10005_low_5 (Length: 363)
Name: NF10005_low_5
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10005_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 37582077 - 37581744
Alignment:
| Q |
13 |
aatttaaattatgttgatacctcttttacgttgctctatttatctattaattttctttcatatttctttatttcagaaaatgaaccaaaa---------g |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
37582077 |
aatttaaattatgttgatacctcttttacgttgctcaatttatctattaattttctttcat-----------tcagaaaatgaaccaaaatacacaaaag |
37581989 |
T |
|
| Q |
104 |
tcatggtgaatttcccatcatagcatttagcatcaatgaatccaaatcccttctccatataatgacaggaattaggacaggtacatcaacaaaggtggca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37581988 |
tcatggtgaatttcccatcatagcatttagcatcaatgaatccaaatcccttc--catataatgacaggaattaggacaggtacatcaacaaaggtggcg |
37581891 |
T |
|
| Q |
204 |
gggtcagccaaggggtatatgtatggttaaacttaaatggcacccttcgcctcttctttgacaacttttgtccattctcccattaaaggacacgtgtggt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37581890 |
gggtcagccaaggggtatatgtatggttaaacttaaatggcacccttcgcctcttctttgagaacttttgtccattctcccattaaaggacacgtgtggt |
37581791 |
T |
|
| Q |
304 |
acagcaaagtagtagttgttgtatctgtacagcaacagctcttccct |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37581790 |
acagcaaagtagtagttgttgtatctgtacagcaacagctcttccct |
37581744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University