View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10005_low_8 (Length: 241)
Name: NF10005_low_8
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10005_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 8169397 - 8169597
Alignment:
| Q |
17 |
cataggcatcatttggaagtcaagatggaagaagaaagattgtggatccaatagtgttaacaacttgttctcaagaatcattatcaattgcaatatctat |
116 |
Q |
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| T |
8169397 |
cataggcatcatttggaagtcaagatggaagaagaaagattgtggatccaatagtgttgacaacttgctctcaagaatcattatcaattgcaatatctat |
8169496 |
T |
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| Q |
117 |
aacaaccaaatgtatatctcaagactcttcatctcgtccttcttttgaagatgttctatggaacttacaatatgcagctcaagttcaagccacatcagat |
216 |
Q |
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| T |
8169497 |
aacaaccaaatgtatatctcaagactcttcatctcgtccttcttttgaagatgttctatggaacttacaatatgcagctcaagttcaagccacatcagat |
8169596 |
T |
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| Q |
217 |
g |
217 |
Q |
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| T |
8169597 |
g |
8169597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 10975450 - 10975253
Alignment:
| Q |
20 |
aggcatcatttggaagtcaagatggaagaagaaagattgtggatccaatagtgttaacaacttgttctcaagaatcattatcaattgcaatatctataac |
119 |
Q |
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||||||| |||| ||||| ||||| |||| || ||||| |||||| ||||||| |||||||| | |||||| || ||| ||||||||||||| || || |
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| T |
10975450 |
aggcatcgtttgatagtcatgatggtagaaaaagaattgtagatccagtagtgttgacaacttgctgtcaagagtctttaacaattgcaatatccattac |
10975351 |
T |
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| Q |
120 |
aaccaaatgtatatctcaagactcttcatctcgtccttcttttgaagatgttctatggaacttacaatatgcagctcaagttcaagccacatcagatg |
217 |
Q |
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| T |
10975350 |
aaccaaatgcatatcaccacaatcctcatctcgtccttcttttgaagatgttctctggaatttacaatatgcagctcaagtccaagcctcagcagatg |
10975253 |
T |
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