View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10005_low_9 (Length: 240)
Name: NF10005_low_9
Description: NF10005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10005_low_9 |
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| [»] scaffold0528 (2 HSPs) |
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Alignment Details
Target: scaffold0528 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 585 - 414
Alignment:
| Q |
15 |
cataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagc |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
585 |
cataggcttggtttgtgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagc |
486 |
T |
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| Q |
115 |
aacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
485 |
aacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata |
414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 383 - 348
Alignment:
| Q |
187 |
tttaaagtttctctttcaaatcatcaaatactgaga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
383 |
tttaaagtttctctttcaaatcatcaaatactgaga |
348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 31038751 - 31038922
Alignment:
| Q |
15 |
cataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagc |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31038751 |
cataggcttggtttgtgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagc |
31038850 |
T |
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| Q |
115 |
aacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31038851 |
aacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata |
31038922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 31047974 - 31048145
Alignment:
| Q |
15 |
cataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagc |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31047974 |
cataggcttggtttgtgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagc |
31048073 |
T |
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| Q |
115 |
aacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048074 |
aacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata |
31048145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 31033360 - 31033521
Alignment:
| Q |
15 |
cataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagc |
114 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || |||| |||||||||||||||||||| |
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| T |
31033360 |
cataggcttggtttgtgtgtgtagtacgtggtaacaatttccaaaattcaatttgagtattatgtttttgcattattgcaggcatacaggagtaaagagc |
31033459 |
T |
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| Q |
115 |
aacatcggcaaatttattggatagccgtcaacttattcta--gtcacttagttgtttgcttca |
175 |
Q |
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| T |
31033460 |
aacatcggcaaa-ttattggatagccgtcgacttattctatggtcacttagttgtttgcttca |
31033521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 31052101 - 31052259
Alignment:
| Q |
30 |
tgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatacaggagtaaagagcaacatcggcaaattt |
129 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||||| ||||||||| |||||||| |||||||||| ||||||| |||||||||| || || |
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| T |
31052101 |
tgtgtgtagtacatggtaacaatttccaaaattcaatttgagtagtatgtttttgcagaattgcaggcatacaggcgtaaagaacaacatcggcgaa-tt |
31052199 |
T |
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| Q |
130 |
attggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaatattt |
189 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31052200 |
attggatagccgtcgacttattctagtcacttagttgtttgcttcataatgtgaatattt |
31052259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 31038953 - 31038988
Alignment:
| Q |
187 |
tttaaagtttctctttcaaatcatcaaatactgaga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31038953 |
tttaaagtttctctttcaaatcatcaaatactgaga |
31038988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 31048176 - 31048211
Alignment:
| Q |
187 |
tttaaagtttctctttcaaatcatcaaatactgaga |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31048176 |
tttaaagtttctctttcaaatcatcaaatactgaga |
31048211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 31052287 - 31052322
Alignment:
| Q |
187 |
tttaaagtttctctttcaaatcatcaaatactgaga |
222 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
31052287 |
tttacagtttctctttcaaatcatcaaatactgaga |
31052322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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