View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10006_high_2 (Length: 555)
Name: NF10006_high_2
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 33127812 - 33127539
Alignment:
| Q |
15 |
cagagatgtgacctagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
114 |
Q |
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| T |
33127812 |
cagagatgtgaccaagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
33127713 |
T |
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| Q |
115 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
214 |
Q |
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| T |
33127712 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
33127613 |
T |
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| Q |
215 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatattattaat |
288 |
Q |
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| T |
33127612 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatattattaat |
33127539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 280 - 540
Target Start/End: Complemental strand, 33127509 - 33127248
Alignment:
| Q |
280 |
attattaatatgtgtaccttttgtatgatttgaactacctcaggagaaccgcaaaaccctgattctcctttcgtttgtgtcttaagatcaccttcttcca |
379 |
Q |
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| T |
33127509 |
attattaatatgtgtaccttttgtatgatttgaactacctcaggagaaccgcaaaaccctgattctccttttgtttgtgtcttaagatcaccttcttcca |
33127410 |
T |
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| Q |
380 |
ttttcgtgatctcacttgtagacatgttaacctaaattaaataattaaattgaac-nnnnnnnnnnnnnnnncttagactcctttatgcatgtctttggt |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33127409 |
ttttcgtgatctcacttgtagacatgttaacctaaattaaataattaaattgaactttttttctttctttttcttagactcctttatgcatgtctttggt |
33127310 |
T |
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| Q |
479 |
gtggaacatggttcaaagtttatgcttgtaatccaaacttacttattgatatatgtagtttt |
540 |
Q |
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| T |
33127309 |
gtggaacatggttcaaaatttatgcttgtaatccaaacttgcttattgatatatgtagtttt |
33127248 |
T |
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