View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10006_low_1 (Length: 560)
Name: NF10006_low_1
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 12550750 - 12550203
Alignment:
| Q |
1 |
caataatgactttctttcatatcatagatcgacacgtgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattac |
100 |
Q |
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| T |
12550750 |
caataatgactttctttcatatcatagatcgacatgtgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattac |
12550651 |
T |
|
| Q |
101 |
caagccatacgtaccttctgcaaaggttctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgatt |
200 |
Q |
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| T |
12550650 |
caagccatacgtaccttctgcaaaggatctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgatc |
12550551 |
T |
|
| Q |
201 |
atttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagattt |
300 |
Q |
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| T |
12550550 |
atttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagattt |
12550451 |
T |
|
| Q |
301 |
aaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcggatacattgttattaccaacc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12550450 |
aaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcgaatacattgttattaccaacc |
12550351 |
T |
|
| Q |
401 |
aacctctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacac |
500 |
Q |
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| T |
12550350 |
aacctctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacac |
12550251 |
T |
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| Q |
501 |
ctttttcattcagatttctcagacgccaacacagtgtttcctcctatg |
548 |
Q |
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| T |
12550250 |
ctttttcattcagatttctcagacgccaacacagtgtttcctcctatg |
12550203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 9462358 - 9462194
Alignment:
| Q |
106 |
catacgtaccttctgcaaaggtt-ctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgattattt |
204 |
Q |
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||||| ||||||||||| || || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
9462358 |
catacataccttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaacctgcaagcaacattaataattgttcaagttgattattt |
9462259 |
T |
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| Q |
205 |
gttaatcatctt------agacctcagaattagtcactctactttctggtatagatttttatggc |
263 |
Q |
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|||||||||||| ||| |||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
9462258 |
gttaatcatcttagtttgagatctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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