View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10006_low_11 (Length: 202)
Name: NF10006_low_11
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 31225570 - 31225409
Alignment:
| Q |
19 |
caaggtgatttgttgatgaactagttttaacatcaccaactacatgcatgaacaacatttgtctcatttaaaaccttattagaagacctcaatggaatga |
118 |
Q |
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| T |
31225570 |
caaggtgatttgttgatgaactagttttaacatcaccaactacatgcatgaacaacatttgtctcatttaaaaccttattaga--acctcaatggaatga |
31225473 |
T |
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| Q |
119 |
gacatttgtgtgaaggaaaaaacgtaggcatatcattttcaatactcctctttaaccgtatatt |
182 |
Q |
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| T |
31225472 |
gacatttgtgtgaaggaaaaaacgtaggcatatcattttcaatactcctctttaaccgtatatt |
31225409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 31225619 - 31225698
Alignment:
| Q |
101 |
aagacctcaatggaatgagacatttgtgtgaaggaaaaaacgtaggcatatcattttcaatactcctctttaaccgtatatt |
182 |
Q |
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| T |
31225619 |
aagacctcaatggaataagacatttgtg--aaggaaaaaacataggcatatcattctcaatactcctctttaaccgtatatt |
31225698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31224921 - 31224973
Alignment:
| Q |
19 |
caaggtgatttgttgatgaactagttttaacatcaccaactacatgcatgaac |
71 |
Q |
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| T |
31224921 |
caaggtgatttgttgatgaattagttttaacatcatcaactacatgcacgaac |
31224973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 31226200 - 31226148
Alignment:
| Q |
19 |
caaggtgatttgttgatgaactagttttaacatcaccaactacatgcatgaac |
71 |
Q |
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| T |
31226200 |
caaggtgatttgttgatgaattagttttaacatcatcaattacgtgcacgaac |
31226148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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