View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10006_low_3 (Length: 474)

Name: NF10006_low_3
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10006_low_3
NF10006_low_3
[»] chr4 (3 HSPs)
chr4 (16-456)||(52712030-52712483)
chr4 (16-241)||(52717627-52717852)
chr4 (322-414)||(52717929-52718021)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 52712030 - 52712483
Alignment:
Q  16 agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712030 agagaaagagactttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac 52712129  T
Q  116 agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt 215  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712130 agatgccaccagcaagtgtgatgacaaaactcatcctcttcatggtttggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt 52712229  T
Q  216 ttggtctcttatatcatttgggtattaaaatcttctatctt-------------------ttataacgttggatcatgaataataataatattaaagatt 296  Q
    ||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||   |||||||||||||||||||    
T  52712230 ttggtctcttatatcatttgggtataaaaatcttctatcttttttgtctttatcaatcaattataacgttggatcatg---aataataatattaaagatt 52712326  T
Q  297 ttttaaacttcaaataaataatcactgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatgctggtcttggaatg 396  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52712327 ttttaaacttcaaata---aatcactgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatactggtcttggaatg 52712423  T
Q  397 gccatgtttagtctaggtttgttcatgggattacaacctaagctgatttcatgtgggaaa 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52712424 gccatgtttagtctaggtttgttcatgggattacaacctaagctgatttcacgtgggaaa 52712483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 52717627 - 52717852
Alignment:
Q  16 agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac 115  Q
    |||||||| ||  ||||||||||||||| |  |||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||| | ||    
T  52717627 agagaaagggatgttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacac 52717726  T
Q  116 agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt 215  Q
    ||||||||||||||||||| ||||||| ||| |||||| |||||||  ||||||||||||||||||||||||| || ||| |||||||||| ||||||||    
T  52717727 agatgccaccagcaagtgtcatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgt 52717826  T
Q  216 ttggtctcttatatcatttgggtatt 241  Q
    |||||||||| |||||||| ||||||    
T  52717827 ttggtctcttgtatcatttaggtatt 52717852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 52717929 - 52718021
Alignment:
Q  322 tgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatgctggtcttggaatggccatgtttagtctaggt 414  Q
    |||||||| |||||||||||||| || |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  52717929 tgcaggtttcacattgaaatgccatccattgtaaaaggttccatctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggt 52718021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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