View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10006_low_3 (Length: 474)
Name: NF10006_low_3
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 52712030 - 52712483
Alignment:
| Q |
16 |
agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac |
115 |
Q |
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| T |
52712030 |
agagaaagagactttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac |
52712129 |
T |
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| Q |
116 |
agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt |
215 |
Q |
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| T |
52712130 |
agatgccaccagcaagtgtgatgacaaaactcatcctcttcatggtttggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt |
52712229 |
T |
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| Q |
216 |
ttggtctcttatatcatttgggtattaaaatcttctatctt-------------------ttataacgttggatcatgaataataataatattaaagatt |
296 |
Q |
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| T |
52712230 |
ttggtctcttatatcatttgggtataaaaatcttctatcttttttgtctttatcaatcaattataacgttggatcatg---aataataatattaaagatt |
52712326 |
T |
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| Q |
297 |
ttttaaacttcaaataaataatcactgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatgctggtcttggaatg |
396 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52712327 |
ttttaaacttcaaata---aatcactgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatactggtcttggaatg |
52712423 |
T |
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| Q |
397 |
gccatgtttagtctaggtttgttcatgggattacaacctaagctgatttcatgtgggaaa |
456 |
Q |
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| T |
52712424 |
gccatgtttagtctaggtttgttcatgggattacaacctaagctgatttcacgtgggaaa |
52712483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 52717627 - 52717852
Alignment:
| Q |
16 |
agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac |
115 |
Q |
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| T |
52717627 |
agagaaagggatgttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacac |
52717726 |
T |
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| Q |
116 |
agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt |
215 |
Q |
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| T |
52717727 |
agatgccaccagcaagtgtcatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgt |
52717826 |
T |
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| Q |
216 |
ttggtctcttatatcatttgggtatt |
241 |
Q |
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| T |
52717827 |
ttggtctcttgtatcatttaggtatt |
52717852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 52717929 - 52718021
Alignment:
| Q |
322 |
tgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatgctggtcttggaatggccatgtttagtctaggt |
414 |
Q |
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|||||||| |||||||||||||| || |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
52717929 |
tgcaggtttcacattgaaatgccatccattgtaaaaggttccatctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggt |
52718021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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