View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10006_low_4 (Length: 445)
Name: NF10006_low_4
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_low_4 |
 | |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Original strand, 27224167 - 27224593
Alignment:
| Q |
7 |
cttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27224167 |
cttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcc |
27224266 |
T |
|
| Q |
107 |
tctccctttcaccctttcttcaaatccatcttctaaaagccatttttctacttcaccccacatatatgcttttctcaccacccaaataaacggtctattg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27224267 |
tctccctttcaccctttcttcaaatccatcttctaaaagccatttttctacttcaccccacatatatgcttttctcaccacccaaataaacggtctattg |
27224366 |
T |
|
| Q |
207 |
gtagcttctaatcccaaaccaaattctatcaattgttttggtgttacacgattaagactaccaagacaagcataaattacagaattttcaggccatgaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27224367 |
gtagcttctaatcccaaaccaaattctatcaattgttttggtgttacacgattaagactaccaagacaagcataaattacagaattttcaggccatgaat |
27224466 |
T |
|
| Q |
307 |
caagccacttcacatattgatttgcatcatcaattgaattttttctacctctttcagctttttctaaatcatctttatttgttaacgaaacaggaccaac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27224467 |
caagccacttcacatattgatttgcatcatcaattgaattttttctacctctttcagctttttctaaatcatctttatttgttaacgaaacaggaccaac |
27224566 |
T |
|
| Q |
407 |
acaccataccttatttcccgtaaccct |
433 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
27224567 |
acaccataccttatttcccgtaaccct |
27224593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 27229890 - 27229945
Alignment:
| Q |
186 |
acccaaataaacggtctattggtagcttctaatcccaaaccaaattctatcaattg |
241 |
Q |
| |
|
||||||||||| |||||||| | |||||| ||||||||||||| ||||||||||| |
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|
| T |
27229890 |
acccaaataaaaggtctatttgaagcttcaaatcccaaaccaagctctatcaattg |
27229945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 430
Target Start/End: Original strand, 20156851 - 20157271
Alignment:
| Q |
7 |
cttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcc |
106 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |
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|
| T |
20156851 |
cttctaatgttgaattccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtggagcccaacctctaatcaaaattcc |
20156950 |
T |
|
| Q |
107 |
tctccctttcaccctttcttcaaatccatcttctaaaagccatttttctacttcaccccacatatatgcttttctcaccacccaaataaacggtctattg |
206 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||||||||||| || |||||||| |
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|
| T |
20156951 |
tctccctttaaccctctcttcaaatccatcttctaatagccatttttccatttcaccccacttatatgcttttctcaccacccaaatgaatggtctatta |
20157050 |
T |
|
| Q |
207 |
gtagcttctaatcccaaaccaaattctatcaattgttttggtgttacacgattaagactaccaagacaagcataaattacagaattttcaggccatgaat |
306 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||| |
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|
| T |
20157051 |
gtagcttccaatcccaaaccaatttccatcaattgtttaggtgttacacgattaagactaccaagacaaacataaattactgagtttttaggccatgaat |
20157150 |
T |
|
| Q |
307 |
caagccacttcacatattgatttgcatcatcaattgaattttttctacctctttcagctttttctaaatcatctttatttgttaacgaaacaggaccaac |
406 |
Q |
| |
|
|||||| |||||||| | ||||| ||||||| ||||||| |||||||||| ||||||||||| |||||||||||| | ||| ||||| |||||||| |
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|
| T |
20157151 |
taagccaattcacatactcatttg---catcaataaaatttttactacctctttgagctttttctatatcatctttattcgataatgaaactggaccaac |
20157247 |
T |
|
| Q |
407 |
acaccataccttatttcccgtaac |
430 |
Q |
| |
|
|||||||||||||| ||| ||||| |
|
|
| T |
20157248 |
acaccataccttatgtcctgtaac |
20157271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 13648221 - 13648162
Alignment:
| Q |
8 |
ttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaa |
67 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
13648221 |
ttccaaagttgaattccacccattatgtgtcaaaaaagcaccaattgccttatgtgacaa |
13648162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 13653275 - 13653217
Alignment:
| Q |
9 |
tccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaa |
67 |
Q |
| |
|
||||| || |||||||| |||| |||||||||||| ||||| ||||| ||||||||||| |
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|
| T |
13653275 |
tccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgccttatgtgacaa |
13653217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 13658748 - 13658690
Alignment:
| Q |
9 |
tccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaa |
67 |
Q |
| |
|
||||| || |||||||| |||| |||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
13658748 |
tccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgacaa |
13658690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 41545719 - 41545410
Alignment:
| Q |
7 |
cttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcc |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| | |||||| |||||||| |||||||||| | ||||| || |
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|
| T |
41545719 |
cttccaatgttgaattccatccacaatgtgtcaaaaaaatacctattgctttgtgtgatagtatcaacacttgtggtgcccaaccctttatcaaaaagcc |
41545620 |
T |
|
| Q |
107 |
tctccctttcaccctttcttcaaatccatcttctaaaagccatttttctacttcaccccacatatatgcttttctcaccacccaaataaacggtctattg |
206 |
Q |
| |
|
||| ||||||||| | ||||| || ||||| | | |||||| || | ||| | | |||||| ||||| ||||||||| || || || || |
|
|
| T |
41545619 |
tctattcttcacccttccctcaaacccttcttcatataaccatttctccatttcctctcttccatatgcacctctcaacacccaaatgaatggccttttt |
41545520 |
T |
|
| Q |
207 |
gtagcttctaatcccaaaccaaattctatcaattgttttggtgttacacgattaagactaccaagacaagcataaattacagaattttcaggccatgaat |
306 |
Q |
| |
|
|| || ||||||||||| |||| ||| ||||||||| |||||| |||| || | |||||| |||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
41545519 |
gttgcctctaatcccaatccaacctctttcaattgttgaggtgttgcacggtttaaactaccgagacaaacataaataacagaatttgaaggccatgaat |
41545420 |
T |
|
| Q |
307 |
caagccactt |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
41545419 |
caagccactt |
41545410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 41511485 - 41511445
Alignment:
| Q |
14 |
tgttgaattccaaccacaatgtgtcaaaaatgcacctattg |
54 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
41511485 |
tgttgaattccaaccacaatgagtcaaaaatccaccaattg |
41511445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 560457 - 560499
Alignment:
| Q |
16 |
ttgaattccaaccacaatgtgtcaaaaatgcacctattgcttt |
58 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
560457 |
ttgaattccaaccacaatgagttaaaaatgcaccaattgcttt |
560499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 3770202 - 3770238
Alignment:
| Q |
14 |
tgttgaattccaaccacaatgtgtcaaaaatgcacct |
50 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
3770202 |
tgttgaattccaaccacaatgtgttaaaaatccacct |
3770238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 13695614 - 13695644
Alignment:
| Q |
7 |
cttccaatgttgaattccaaccacaatgtgt |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13695614 |
cttccaatgttgaattccaaccacaatgtgt |
13695644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 11649 - 11686
Alignment:
| Q |
17 |
tgaattccaaccacaatgtgtcaaaaatgcacctattg |
54 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
11649 |
tgaattccaaccacaatgagtcaaaaatgcaccaattg |
11686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 33396747 - 33396779
Alignment:
| Q |
7 |
cttccaatgttgaattccaaccacaatgtgtca |
39 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
33396747 |
cttccaatgttgaattccatccacaatgtgtca |
33396779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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