View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10006_low_5 (Length: 414)
Name: NF10006_low_5
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 50422649 - 50423033
Alignment:
| Q |
17 |
accatcttctatgtagcctataccttccctaaactcgaaccaaaccaaaccaacctcgtcttctacgtccatgaccacttcaccggtgaagactccaccg |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50422649 |
accatcatctatgtagcctataccttccctaaactcgaaccaaaccaaaccaacctcgtcttctacgtccatgaccacttcaccggtgaagactccaccg |
50422748 |
T |
|
| Q |
117 |
cagctacagttgctggtaaaactggagttacctccagcatcctacactttggcaccgtagctatagttgacgatccagtaaccgagggacctacaatgga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50422749 |
cagctacagttgctggtaaaactggagttacctccagcatcctacactttggcaccgtagctatagttgacgatccagtaaccgagggacctacaatgga |
50422848 |
T |
|
| Q |
217 |
ttcaaaactcatcggtagagctcaaggcacgtacataaattcgcagcttgatggtaaagctttgtacatggttttctcggtgatattcacagctggtgag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50422849 |
ttcaaaactcatcggtagagctcaaggcacgtacataaattcgcagcttgatggtaaagctttgtacatggttttctcggtgatattcacagctggtgag |
50422948 |
T |
|
| Q |
317 |
tatagaggaagcaccttggagattcaaggatctgatatattcacaacgaaggaacgagaatttggaattgtttcaggcacaggtt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50422949 |
tatagaggaagcaccttggagattcaaggatctgatatattcacaacgaaggaacgagaatttggaattgtttcaggcacaggtt |
50423033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 50427824 - 50428206
Alignment:
| Q |
19 |
catcttctatgtagcctataccttccctaaactcgaaccaaaccaaaccaacctcgtcttctacgtccatgaccacttcaccggtgaagactccaccgca |
118 |
Q |
| |
|
|||| ||||||| ||||| ||||||| |||||||||||||| ||||||||| | |||||||| | || |||||||||||||||||| || | | ||| |
|
|
| T |
50427824 |
catcctctatgtggcctacaccttccaaaaactcgaaccaaatcaaaccaacatgctcttctacattcacgaccacttcaccggtgaaaacacgtcggca |
50427923 |
T |
|
| Q |
119 |
gctacagttgctggtaaaactggagttacctccagcatcctacactttggcaccgtagctatagttgacgatccagtaaccgagggacctacaatggatt |
218 |
Q |
| |
|
| || ||||| |||| || |||| | || | |||| |||||| |||||||| || ||| | || ||||||||||| |||||||| ||||||||| |
|
|
| T |
50427924 |
gtcaccgttgccggtataaatggacccaactttaatatccaacacttcggcaccgtggcaataatcgatgatccagtaacagagggacccgcaatggatt |
50428023 |
T |
|
| Q |
219 |
caaaactcatcggtagagctcaaggcacgtacataaattcgcagcttgatggtaaagctttgtacatggttttctcggtgatattcacagctggtgagta |
318 |
Q |
| |
|
||| |||| | || || ||||| ||| |||| ||||||||||||||||| | ||||| |||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
50428024 |
caacactccttggcagtgctcagggcgtgtacgtaaattcgcagcttgatagcaaagcagtgtacatggttttctcagtgatattcacttctggtaagta |
50428123 |
T |
|
| Q |
319 |
tagaggaagcaccttggagattcaaggatctgatatattcacaacgaaggaacgagaatttggaattgtttcaggcacaggtt |
401 |
Q |
| |
|
| ||||||||| |||||||| ||||||| | | ||| ||||| |||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
50428124 |
cataggaagcacattggagatgcaaggatatagtttatatacaacaaaggaaagagaatttgggattgtttctggcacaggtt |
50428206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University