View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10006_low_6 (Length: 272)
Name: NF10006_low_6
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 43408133 - 43408404
Alignment:
| Q |
1 |
agcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggtccaacaacatctgtcaaagaaagattagtggttgctgt |
100 |
Q |
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| T |
43408133 |
agcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggtccaacaacatctgtcaaagaaagattagtggttgctgt |
43408232 |
T |
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| Q |
101 |
tggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtacctatgaggaggagatcagccctaattcacactcaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408233 |
tggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtacctatgaggaggagatcagccctaattcacactcaaaac |
43408332 |
T |
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| Q |
201 |
cactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttcatgttcgtttc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408333 |
cactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttcatgttcgtttc |
43408404 |
T |
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