View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10006_low_8 (Length: 259)
Name: NF10006_low_8
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10006_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11723261 - 11723503
Alignment:
| Q |
1 |
cagtatgagagagatcttgaaagcattgtgcaaagccatatattggaacaaatcctgcgatatttacggattgagttccccaattatgatcagtcacaag |
100 |
Q |
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| T |
11723261 |
cagtatgagagagatcttgaaaacattgtgcaaagccatatatcggaacaaattctgcgatatttacggattgagttccccaattatgatcagtcacaag |
11723360 |
T |
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| Q |
101 |
ctgtgagagattctccatttcttttatgaaacttgggatgaagtttgatttttgtggtgctttgtctttaccacagtagagtccagcttctgagattctt |
200 |
Q |
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| T |
11723361 |
ctgtgagagattctccatttcttttatgaaacttgggatgaagtttgatttttgtggtgctttgtctttaccacagtagagtccagcttctgagattctt |
11723460 |
T |
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| Q |
201 |
gggtctgaaattgtgtgagaaaataaacatgacatgatgaaaa |
243 |
Q |
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| T |
11723461 |
gggtccgaaattgtgtgagaaaataaacatgacatgatgaaaa |
11723503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 27438814 - 27438926
Alignment:
| Q |
135 |
gggatgaagtttgatttttgtg---gtgctttgtctttaccac-agtagagtccagcttctgagattcttgggtctgaaattgtgtgagaaaataaacat |
230 |
Q |
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| T |
27438814 |
gggatgaagtttgatttttttttttgtgatttgtctttaccaagagtagagtccagcttatgagattcttgggtctgaaattgtgtgagaaaataaacat |
27438913 |
T |
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| Q |
231 |
gacatgatgaaaa |
243 |
Q |
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| T |
27438914 |
gacatgatgaaaa |
27438926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 15729502 - 15729429
Alignment:
| Q |
135 |
gggatgaagtttgatttttgtggtgctttgtctttaccacagtagagtccagcttctgagattcttgggtctga |
208 |
Q |
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| T |
15729502 |
gggataaagtttgatttttgtggtgctttgtctttaccacagtagagtccagcttctgagattcttgggtctga |
15729429 |
T |
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