View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10006_low_9 (Length: 253)

Name: NF10006_low_9
Description: NF10006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10006_low_9
NF10006_low_9
[»] chr1 (5 HSPs)
chr1 (28-236)||(33053638-33053846)
chr1 (32-199)||(22580822-22580991)
chr1 (54-202)||(34059510-34059660)
chr1 (1-30)||(22581026-22581055)
chr1 (1-29)||(33053576-33053604)
[»] chr4 (4 HSPs)
chr4 (28-227)||(41501539-41501738)
chr4 (32-123)||(19140638-19140729)
chr4 (43-105)||(34294869-34294931)
chr4 (1-29)||(41501477-41501505)
[»] scaffold0049 (1 HSPs)
scaffold0049 (28-227)||(45493-45692)
[»] chr5 (2 HSPs)
chr5 (28-220)||(29635832-29636024)
chr5 (1-29)||(29636056-29636084)
[»] chr7 (1 HSPs)
chr7 (32-219)||(39052249-39052437)
[»] chr3 (1 HSPs)
chr3 (32-205)||(678388-678565)
[»] chr8 (1 HSPs)
chr8 (58-202)||(3694802-3694946)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 33053638 - 33053846
Alignment:
Q  28 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 127  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  33053638 aaatccaaatttcaaaaccttaaaccaaagatttttaattgattaccttggtggttggttcaatgtctttgaaggcttttgaatacccctttgtggttgc 33053737  T
Q  128 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 227  Q
    |||||  |||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33053738 acgacgtcggaggacggcgaaatacggtggagacggtggtggtttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 33053837  T
Q  228 cgaataggt 236  Q
     | ||||||    
T  33053838 tggataggt 33053846  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 22580991 - 22580822
Alignment:
Q  32 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 131  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  22580991 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacga 22580892  T
Q  132 ccgcggaggacgaggaaataaggtggagatggtggtggtt--tattgcaactgatttttgagatggagag 199  Q
    | || |||||||| ||||||||| |||||  |||| ||||    ||||||| |||||||||||| |||||    
T  22580891 cggcagaggacgacgaaataaggcggagaaagtggcggttcgcgttgcaacagatttttgagatagagag 22580822  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 34059660 - 34059510
Alignment:
Q  54 aaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacgaccgcggaggacgaggaaataag 153  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| || |||||||| ||||||||    
T  34059660 aaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtcactttgtggttgcacgacggcagaggacgacgaaataag 34059561  T
Q  154 gtggagatggtggtggtt--tattgcaactgatttttgagatggagagaga 202  Q
    | |||||  |||||||||    ||||||| |||||||||||| ||||||||    
T  34059560 gcggagaaagtggtggttcgcgttgcaacagatttttgagatagagagaga 34059510  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 22581055 - 22581026
Alignment:
Q  1 ttaggaccctcaattgcatattcaatcaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  22581055 ttaggaccctcaattgcatattcaatcaaa 22581026  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33053576 - 33053604
Alignment:
Q  1 ttaggaccctcaattgcatattcaatcaa 29  Q
    |||||||||||||||||||||||||||||    
T  33053576 ttaggaccctcaattgcatattcaatcaa 33053604  T

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Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 41501539 - 41501738
Alignment:
Q  28 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  41501539 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 41501638  T
Q  128 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 227  Q
    ||||| ||||||||||   |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41501639 acgacggcggaggacggcaaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 41501738  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 19140729 - 19140638
Alignment:
Q  32 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtgg 123  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  19140729 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtgg 19140638  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 34294931 - 34294869
Alignment:
Q  43 aaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggctt 105  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34294931 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaaggctt 34294869  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41501477 - 41501505
Alignment:
Q  1 ttaggaccctcaattgcatattcaatcaa 29  Q
    |||||||||||||||||||||||||||||    
T  41501477 ttaggaccctcaattgcatattcaatcaa 41501505  T

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Target: scaffold0049 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 45692 - 45493
Alignment:
Q  28 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 127  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||  ||||     
T  45692 aaatccaaatttcaaaaccctaaaccaaatatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcagttgt 45593  T
Q  128 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 227  Q
    ||||| ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45592 acgacggcggaggacggtgaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 45493  T

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Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 29636024 - 29635832
Alignment:
Q  28 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  29636024 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttgttggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 29635925  T
Q  128 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtag 220  Q
    ||||| ||||||||||  ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29635924 acgacggcggaggacggcgaaataaggtggagacggtggtgatttatcgcaactgatttttgagatggagagagaactaaaacgtgattgtag 29635832  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29636084 - 29636056
Alignment:
Q  1 ttaggaccctcaattgcatattcaatcaa 29  Q
    |||||||||||||||||||||||||||||    
T  29636084 ttaggaccctcaattgcatattcaatcaa 29636056  T

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Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 39052249 - 39052437
Alignment:
Q  32 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||  ||||||||||||||||||    
T  39052249 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgtccctttgtggttgcacga 39052348  T
Q  132 ccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaact-acaacgtgattgta 219  Q
    | |||||| |||  |||||| | ||||||  |||||| |||  |||||| ||||||| ||||||||||||| || | ||||||||||||    
T  39052349 cggcggagaacggcgaaataggatggagaccgtggtgatttgctgcaacagattttttagatggagagagagctcaaaacgtgattgta 39052437  T

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Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 678388 - 678565
Alignment:
Q  32 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 131  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  678388 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacga 678487  T
Q  132 ccgcggaggacgaggaaataaggtggagatggtggtggtt----tattgcaactgatttttgagatggagagagaact 205  Q
    |  | |||||||| ||||||||| |||||  |||||||||      |||||||  ||||||||||| |||||||||||    
T  678488 cgacagaggacgacgaaataaggcggagaaagtggtggttcgcgcgttgcaacaaatttttgagatagagagagaact 678565  T

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Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 3694802 - 3694946
Alignment:
Q  58 atttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacgaccgcggaggacgaggaaataaggtgg 157  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| || ||||| |||||||||||||||||||| |||||| |||  |||||| |||||    
T  3694802 atttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgcccctttgtggttgcacgacggcggagaacggcgaaatagggtgg 3694901  T
Q  158 agatggtggtggtttattgcaactgatttttgagatggagagaga 202  Q
    |||  |||||| |||  |||||| ||||||| |||||||||||||    
T  3694902 agaccgtggtgatttgctgcaacagattttttagatggagagaga 3694946  T

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